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Remote performance with x-windows is really poor, its not a supported mode because the performance is just so bad. Performance aside, as long as every user has their own login it should work.Another option is to serve data with an http or https server and use URLs. Copying BAMs to desktops is never recommended and would not be a normal use-case, as you say they are very large. If you have a Linux box Apache works well.
On Mon, Feb 5, 2018 at 9:21 AM, <kin...@gmail.com> wrote:
Hi, I hope this isn't a dumb question!I'd like to load IGV onto a shared-use server I administer so that the users can view their BAM files via X-forwarding (rather than having to copy them to their desktops, which are somewhat memory constrained).As far as I can tell from testing it seems to be quite happy with this (having IGV running from /opt/igv and added to the path) but I'm by no means an Linux expert so just wanted to check to see if there were any likely problems with this sort of arrangement.Thank you!Tom
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<div onclick="igv.browser.loadTrack({
sourceType: 'gcs',
type: 'bam',
//url: '/Users/tiffL/Documents/bfx_request/Sample_1139/test.bam',
url: './test/data/bam/gstt1_sample.bam',
height: 500,
autoHeight: true,
viewAsPairs: false,
name: 'NA12877'})">test.bam
</div>
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