INFO [2017-06-09 09:20:12,329] [Main.java:135] Startup IGV Version 2.3.93 (151)05/15/2017 06:11 PM
INFO [2017-06-09 09:20:12,333] [Main.java:136] Java 1.8.0_131
INFO [2017-06-09 09:20:12,333] [DirectoryManager.java:72] Fetching user directory...
INFO [2017-06-09 09:20:12,894] [Main.java:137] Default User Directory: /Users/xuser
INFO [2017-06-09 09:20:12,894] [Main.java:138] OS: Mac OS X
INFO [2017-06-09 09:20:15,791] [GenomeManager.java:145] Loading genome: /Users/xuser/igv/genomes/hg38.genome
INFO [2017-06-09 09:20:17,412] [GenomeManager.java:192] Genome loaded. id= hg38
INFO [2017-06-09 09:20:17,476] [CommandListener.java:106] Listening on port 60151
INFO [2017-06-09 09:20:53,787] [IGV.java:1701] Loading 1 resources.
INFO [2017-06-09 09:20:54,235] [HttpUtils.java:856] Range-byte request succeeded
INFO [2017-06-09 09:21:30,778] [IGV.java:1701] Loading 1 resources.
INFO [2017-06-09 09:25:36,438] [ShutdownThread.java:51] Shutting down
INFO [2017-06-09 09:25:36,441] [ShutdownThread.java:51] Shutting down
INFO [2017-06-09 09:27:05,298] [Main.java:135] Startup IGV Version 2.3.93 (151)05/15/2017 06:11 PM
INFO [2017-06-09 09:27:05,298] [Main.java:136] Java 1.8.0_131
INFO [2017-06-09 09:27:05,299] [DirectoryManager.java:72] Fetching user directory...
INFO [2017-06-09 09:27:05,302] [Main.java:137] Default User Directory: /Users/xuser
INFO [2017-06-09 09:27:05,302] [Main.java:138] OS: Mac OS X
INFO [2017-06-09 09:27:06,328] [GenomeManager.java:145] Loading genome: /Users/xuser/igv/genomes/hg38.genome
INFO [2017-06-09 09:27:07,502] [GenomeManager.java:192] Genome loaded. id= hg38
INFO [2017-06-09 09:27:07,552] [CommandListener.java:106] Listening on port 60151
INFO [2017-06-09 09:27:16,996] [TrackLoader.java:126] Loading resource, path /Users/xuser/Documents/Homo_sapiens.GRCh38.87.sorted.gtf
ERROR [2017-06-09 09:27:17,104] [DataPanelContainer.java:223] java.awt.datatransfer.UnsupportedFlavorException: Unicode String
INFO [2017-06-09 09:27:19,434] [MessageUtils.java:74] Error loading features for interval: chr17:76534114-76937411 <br>java.lang.ArrayIndexOutOfBoundsException: -116466
ERROR [2017-06-09 09:29:18,251] [FeatureTrack.java:926] Error loading features for interval: chr17:76534114-76937411 <br>java.lang.ArrayIndexOutOfBoundsException: -116466
java.lang.ArrayIndexOutOfBoundsException: -116466
at java.util.ArrayList.elementData(ArrayList.java:418)
at java.util.ArrayList.get(ArrayList.java:431)
at htsjdk.tribble.index.linear.LinearIndex$ChrIndex.getBlocks(LinearIndex.java:209)
at htsjdk.tribble.index.AbstractIndex.getBlocks(AbstractIndex.java:314)
at htsjdk.tribble.TribbleIndexedFeatureReader.query(TribbleIndexedFeatureReader.java:263)
at org.broad.igv.feature.tribble.CachingFeatureReader.queryRaw(CachingFeatureReader.java:73)
at org.broad.igv.feature.AbstractCacher.loadTiles(AbstractCacher.java:198)
at org.broad.igv.feature.AbstractCacher.getBins(AbstractCacher.java:172)
at org.broad.igv.feature.AbstractCacher.queryCached(AbstractCacher.java:102)
at org.broad.igv.feature.tribble.CachingFeatureReader.query(CachingFeatureReader.java:104)
at org.broad.igv.track.TribbleFeatureSource$IndexedFeatureSource.getFeatures(TribbleFeatureSource.java:198)
at org.broad.igv.track.GFFFeatureSource.getFeatures(GFFFeatureSource.java:65)
at org.broad.igv.track.FeatureTrack$1.run(FeatureTrack.java:904)
at org.broad.igv.util.LongRunningTask.call(LongRunningTask.java:72)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
INFO [2017-06-09 09:29:19,148] [ShutdownThread.java:51] Shutting down
INFO [2017-06-09 09:29:19,152] [ShutdownThread.java:51] Shutting down