Yeah, the scanner tutorial assumes actual images from a scanner, while I
assume you have a normal camera lens, but the procedure should be the
same. There are two projections to care about: input, which is whatever
your lens is (probably rectilinear), and output, where you can choose
freely, but you probably want rectilinear as well.
If things warp around the edges of your individual images, you may have
some lens parameters to optimise. That doesn't differ from any other pano.
There was a short thread on 15.2 where Thomas has explained the main
steps. If that doesn't help, you could post a few downsampled images so
we can see what's the matter.
best regards, lukas