Is there an easy to generate control points for a set of images, such that all images are linked only to the first image? Aligning an image stack aligns images in sequence (0-1, 1-2, 2-3, etc) but I would prefer (and think it would be better) if all images were aligned to image 0 only (0-1, 0-2, 0-3, etc). This would stop errors propagating and would ensure that the last image was just as well aligned to image 0 as any other.
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A list of frequently asked questions is available at: http://wiki.panotools.org/Hugin_FAQ
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