Hi!
I have multiple images of size 1024x1024 (in test case 82), they are overlapping each side-by-side for about 50%. I used basic example from http://hugin.sourceforge.net/docs/manual/Panorama_scripting_in_a_nutshell.html to create script:
pto_gen -f 10 -o 1.pto_gen.pto *.png
cpfind -o 2.cpfind.pto --linearmatch --linearmatchlen 1 1.pto_gen.pto
cpclean -o 3.cpclean.pto 2.cpfind.pto
linefind -o 4.linefind.pto 3.cpclean.pto
autooptimiser -a -m -l -s -o 5.autooptimiser.pto 4.linefind.pto
pano_modify --canvas=AUTO --crop=AUTO -o 6.pano_modify.pto 5.autooptimiser.pto
hugin_executor --stitching --prefix=prefix 6.pano_modify.ptoBest regards!