The current Hugin version 2014.0.0 actually aligns images, I saw that on
a friend's Mac when I showed him a basic workflow for partial panoramas.
He had no old preferences so the Assistant ran in a way intended by the
software developers.
It's often a good idea to "dive into" a new program version
(particularly one that is reported to fancy some major changes) with
default settings.
Either rename Hugin's prefs (open the folder /Users/<your
account>/Library/Preferences/ and rename the file "hugin Preferences" to
e.g. "hugin Preferences.txt") while the application isn't running or
just open Hugin's preferences dialog and reset every tab. The first
option has the advantage that you can look up your old settings.
Carl
Mark Roden wrote on 11.07.15 15:01: