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dsk...@gmail.com

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Nov 25, 2019, 3:47:09 PM11/25/19
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Can someone please explain how to work with .dat file? It would help if these was already converted. 

Vincenzo Della Mea

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Nov 25, 2019, 5:23:20 PM11/25/19
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Just follow the instructions (https://ecdp2020.grand-challenge.org/Dataset/ ), and use the Converter you find within Case Viewer.

dsk...@gmail.com

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Nov 26, 2019, 8:48:19 AM11/26/19
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The frustrating thing is that I may need to purchase a license to for Converter to even view or convert the data set. 

Eduardo Conde-Sousa

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Nov 26, 2019, 9:22:39 AM11/26/19
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You don't have to pay anything
It is a free software. Just go to  https://www.3dhistech.com/software-downloads and download the CaseViewer 2.3 (64-bit version) for Windows.
Make sure that you have selected (during the installation afters electiong the destination folder) the "install slide converter".

If you work on linux you can use instead QuPath (https://github.com/qupath/qupath/releases/tag/v0.2.0-m6) that allows you to open mrsx files and exporte as ome-tiff.


Eduardo Conde-Sousa
INEB – Instituto Nacional de Engenharia Biomédica
i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto
Rua Alfredo Allen, 208 | 4200-135 Porto, Portugal


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dsk...@gmail.com

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Nov 26, 2019, 10:49:29 AM11/26/19
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I was able to install the CaseViewer. However, It does not recognize or show the .dat file when trying to import image. I just downloaded one file to see if works. Do I need to download the whole folder in order to see all the images?


On Tuesday, November 26, 2019 at 8:22:39 AM UTC-6, Eduardo Conde-Sousa wrote:
You don't have to pay anything
It is a free software. Just go to  https://www.3dhistech.com/software-downloads and download the CaseViewer 2.3 (64-bit version) for Windows.
Make sure that you have selected (during the installation afters electiong the destination folder) the "install slide converter".

If you work on linux you can use instead QuPath (https://github.com/qupath/qupath/releases/tag/v0.2.0-m6) that allows you to open mrsx files and exporte as ome-tiff.


Eduardo Conde-Sousa
INEB – Instituto Nacional de Engenharia Biomédica
i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto
Rua Alfredo Allen, 208 | 4200-135 Porto, Portugal


<dsk...@gmail.com> escreveu no dia terça, 26/11/2019 à(s) 13:48:
The frustrating thing is that I may need to purchase a license to for Converter to even view or convert the data set. 

On Monday, November 25, 2019 at 4:23:20 PM UTC-6, Vincenzo Della Mea wrote:
Just follow the instructions (https://ecdp2020.grand-challenge.org/Dataset/ ), and use the Converter you find within Case Viewer.

On Monday, November 25, 2019 at 9:47:09 PM UTC+1, dsk...@gmail.com wrote:
Can someone please explain how to work with .dat file? It would help if these was already converted. 

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econdesousa

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Nov 26, 2019, 11:04:00 AM11/26/19
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Each "image" has several files. One mrsx (the main file) that should be accompanied by a folder with the same name and a set of dat files. None of these files suits your purposes without the remaining ones. If you want to test, download e.g. 1.mrsx and the folder 1/ (folder plus all its contents), and open 1.mrsx with case viewer or qupath.

dsk...@gmail.com

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Nov 26, 2019, 11:35:21 AM11/26/19
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The link to google drive only shows .dat extensions inside the folders. I do not see .mrsx extensions. I also tried the other link provided. However, I do not have user/password to access it. 

Eduardo Conde-Sousa

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Nov 26, 2019, 11:37:36 AM11/26/19
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you need the mrsxs and the folder with the same name. The mrsx are outside the foder (in the same mother directory- in Gdrive scroll down to find the mrsx). Open the mrsx file (the folder and the dat files will be used without your intervention)



Eduardo Conde-Sousa
INEB – Instituto Nacional de Engenharia Biomédica
i3S – Instituto de Investigação e Inovação em Saúde, Universidade do Porto
Rua Alfredo Allen, 208 | 4200-135 Porto, Portugal

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dsk...@gmail.com

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Nov 26, 2019, 11:43:39 AM11/26/19
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I defiantly owe you an apology for your time. I wasn't paying attention to details. Thank you for your help! 
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