Hi Benoit,
I have problems with running the GeneRax with the
mpiexec. After starting, each line output to the console is repeated
several times and the process ends with the LibpllException error.
""""
[00:00:00] [Initialization] Initial optimization of the starting random gene trees
[00:00:00] [Initialization] All the families will first be optimized with sequences only
[00:00:00] [Initialization] Initial optimization of the starting random gene trees
[00:00:00] [Initialization] All the families will first be optimized with sequences only
[00:00:00] [Initialization] Initial optimization of the starting random gene trees
[00:00:00] [Initialization] All the families will first be optimized with sequences only
[00:00:00] [Initialization] Initial optimization of the starting random gene trees
[00:00:00] [Initialization] All the families will first be optimized with sequences only
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 0 on node tux exited on signal 6 (Aborted).
--------------------------------------------------------------------------
terminate called after throwing an instance of 'LibpllException'
what(): Error while reading tree (file is empty) from file: resultsWithError/startingTrees/OG0004469.newick
terminate called after throwing an instance of 'LibpllException'
""""
When running GeneRax in single-threaded mode, there are no problems
Have you got any idea what could go wrong?
I have attached an archive with the data and the output of generax, in case you need them
https://drive.google.com/file/d/1Pb6Z5EVP1Bj33yI2ws08UtTWFbrLQ9BK/view?usp=sharingThanks a lot!
Nick