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Hi,
I get no answer.
I ran again without the sample RARE330, it worked.
but when I added it, I had this message below and I did not see chromosome 0 in the input.
Could you please try to run it?
GISTIC 2.0 input error detected: 4 invalid chromosomes detected in segment file '/opt/gpcloud/gp_home/users/Hela/uploads/tmp/run3286665823858790871.tmp/seg.file/1/CPC bug.seg.txt'. First invalid chromosome is '0' on line 170
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To view this discussion on the web visit https://groups.google.com/d/msgid/genepattern-help/b9603e85-237c-470e-a52c-3c2b697ef32cn%40googlegroups.com.