Text to GCT file

[Shweta Johari]

Good evening, 

May I please know how to change the data from Text delimited file to gct?

The file has the #1.2 in the first column above the no. of rows and then the number of samples according to the gct. file format. 

May I please know, after saving it in text delimited format. What to do next?

Thank you in advance.

Yours sincerely,

Shweta Johari 

[Anthony Castanza]

Hello,

Assuming the information was added to the file correctly, the final step is simply to change the file extension from .txt to .gct.

-Anthony

Anthony S. Castanza, PhD
Curator, Molecular Signatures Database
Mesirov Lab, Department of Medicine
University of California, San Diego

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[Shweta Johari]

Respected Sir, 

Thank you. 

I did that too but still it is displayed as a text file and not gct. 

Yours sincerely, 

Shweta Johari 

[Anthony Castanza]

Hello,

 

It looks like your operating system is hiding known file extensions by default. You'll have to set file extensions to "show" then you should be able to remove the previous .txt extension.

Microsoft describes how to do this here: https://social.technet.microsoft.com/wiki/contents/articles/1784.windows-how-to-view-file-name-extensions.aspx

 

-Anthony

 

Anthony S. Castanza, PhD

Curator, Molecular Signatures Database

Mesirov Lab, Department of Medicine

University of California, San Diego

 

To view this discussion on the web visit https://groups.google.com/d/msgid/genepattern-help/5a4ddcd4-7a04-42d4-ab69-621cbdebb2a2n%40googlegroups.com.