FDS 6.6 running using MPI_Processs
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gsztar
Nov 3, 2017, 8:16:37 AM11/3/17
to FDS and Smokeview Discussions
Hi,
I would like to run my fds file on 8 cores using MPI, but I received following warning:
Mesh 1 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
Mesh 1 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 1 is assigned to MPI Process 0
Mesh 14 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 1 is assigned to MPI Process 0
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
Mesh 1 is assigned to MPI Process 0
Mesh 1 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
Mesh 1 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
Mesh 1 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 2 and only one MPI process exists
Mesh 2 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 3 and only one MPI process exists
Mesh 3 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 4 and only one MPI process exists
Mesh 4 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 5 and only one MPI process exists
Mesh 5 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 6 and only one MPI process exists
Mesh 6 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 7 and only one MPI process exists
Mesh 7 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 8 and only one MPI process exists
Mesh 8 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 9 and only one MPI process exists
Mesh 9 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 10 and only one MPI process exists
Mesh 10 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 11 and only one MPI process exists
Mesh 11 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 12 and only one MPI process exists
Mesh 12 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 13 and only one MPI process exists
Mesh 13 is assigned to MPI Process 0
WARNING: MPI_PROCESS set for MESH 14 and only one MPI process exists
Mesh 14 is assigned to MPI Process 0
Could please help me, please?
Salah Benkorichi
Nov 3, 2017, 8:19:19 AM11/3/17
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I see,
This happens when you set MPI_PROCESS but then you run it in serial rather than in parallel.
Upload your file with the meshes only, to check.
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gsztar
Nov 3, 2017, 8:21:23 AM11/3/17
to FDS and Smokeview Discussions
Continue:
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 2
Completed Initialization Step 2
Completed Initialization Step 2
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 1
Completed Initialization Step 2
Completed Initialization Step 3
Completed Initialization Step 4
Completed Initialization Step 3
Completed Initialization Step 4
Completed Initialization Step 3
Completed Initialization Step 4
Completed Initialization Step 3
Completed Initialization Step 4
Fire Dynamics Simulator
Current Date : November 3, 2017 13:13:35
Version : FDS 6.6.0
Revision : FDS6.6.0-131-g88ae75a-HEAD
Revision Date : Wed Nov 1 16:03:29 2017 -0400
Compiler : Intel ifort 17.0.4
Compilation Date : Nov 01, 2017 21:03:34
MPI Enabled; Number of MPI Processes: 1
OpenMP Enabled; Number of OpenMP Threads: 1
MPI version: 3.1
MPI library version: Intel(R) MPI Library 2017 Update 3 for Linux* OS
Job TITLE :
Job ID string : SD1_test
Fire Dynamics Simulator
Current Date : November 3, 2017 13:13:35
Version : FDS 6.6.0
Revision : FDS6.6.0-131-g88ae75a-HEAD
Revision Date : Wed Nov 1 16:03:29 2017 -0400
Compiler : Intel ifort 17.0.4
Compilation Date : Nov 01, 2017 21:03:34
MPI Enabled; Number of MPI Processes: 1
OpenMP Enabled; Number of OpenMP Threads: 1
MPI version: 3.1
MPI library version: Intel(R) MPI Library 2017 Update 3 for Linux* OS
Job TITLE :
Job ID string : SD1_test
Fire Dynamics Simulator
Current Date : November 3, 2017 13:13:35
Version : FDS 6.6.0
Revision : FDS6.6.0-131-g88ae75a-HEAD
Revision Date : Wed Nov 1 16:03:29 2017 -0400
Compiler : Intel ifort 17.0.4
Compilation Date : Nov 01, 2017 21:03:34
MPI Enabled; Number of MPI Processes: 1
OpenMP Enabled; Number of OpenMP Threads: 1
MPI version: 3.1
MPI library version: Intel(R) MPI Library 2017 Update 3 for Linux* OS
Job TITLE :
Job ID string : SD1_test
Fire Dynamics Simulator
Current Date : November 3, 2017 13:13:35
Version : FDS 6.6.0
Revision : FDS6.6.0-131-g88ae75a-HEAD
Revision Date : Wed Nov 1 16:03:29 2017 -0400
Compiler : Intel ifort 17.0.4
Compilation Date : Nov 01, 2017 21:03:34
MPI Enabled; Number of MPI Processes: 1
OpenMP Enabled; Number of OpenMP Threads: 1
MPI version: 3.1
MPI library version: Intel(R) MPI Library 2017 Update 3 for Linux* OS
Job TITLE :
Job ID string : SD1_test
Time Step: 1, Simulation Time: 0.17 s
Time Step: 1, Simulation Time: 0.17 s
Time Step: 1, Simulation Time: 0.17 s
Time Step: 1, Simulation Time: 0.17 s
Time Step: 2, Simulation Time: 0.33 s
Time Step: 2, Simulation Time: 0.33 s
Time Step: 2, Simulation Time: 0.33 s
Time Step: 2, Simulation Time: 0.33 s
Time Step: 3, Simulation Time: 0.50 s
Time Step: 3, Simulation Time: 0.50 s
Time Step: 3, Simulation Time: 0.50 s
Time Step: 3, Simulation Time: 0.50 s
Time Step: 4, Simulation Time: 0.67 s
Time Step: 4, Simulation Time: 0.67 s
Time Step: 4, Simulation Time: 0.67 s
Time Step: 4, Simulation Time: 0.67 s
Time Step: 5, Simulation Time: 0.83 s
Time Step: 5, Simulation Time: 0.83 s
Time Step: 5, Simulation Time: 0.83 s
Time Step: 5, Simulation Time: 0.83 s
Completed Initialization Step 2
Completed Initialization Step 2
Completed Initialization Step 2
Completed Initialization Step 2
Everything is repeated tree times.
gsztar
Nov 3, 2017, 8:26:32 AM11/3/17
to FDS and Smokeview Discussions
&MESH ID='Mesh03', IJK=52,174,13, XB=2.2,12.6,0.2,35.0,0.0,2.6, MPI_PROCESS=0/
&MESH ID='Mesh14', IJK=16,13,5, XB=2.2,5.4,10.8,13.4,2.6,3.6, MPI_PROCESS=1/
&MESH ID='Mesh15', IJK=8,5,5, XB=43.0,44.6,22.0,23.0,2.6,3.6, MPI_PROCESS=1/
&MESH ID='Mesh05', IJK=32,158,13, XB=24.0,30.4,0.2,31.8,0.0,2.6, MPI_PROCESS=1/
&MESH ID='Mesh16', IJK=21,9,5, XB=58.8,63.0,8.8,10.6,2.6,3.6, MPI_PROCESS=1/
&MESH ID='Mesh12', IJK=8,5,5, XB=26.2,27.8,22.0,23.0,2.6,3.6, MPI_PROCESS=1/
&MESH ID='Mesh07', IJK=80,87,13, XB=54.4,70.4,-6.8,10.6,0.0,2.6, MPI_PROCESS=2/
&MESH ID='Mesh09', IJK=33,12,13, XB=63.8,70.4,10.6,13.0,0.0,2.6, MPI_PROCESS=2/
&MESH ID='Mesh01', IJK=43,174,13, XB=-6.4,2.2,0.2,35.0,0.0,2.6, MPI_PROCESS=3/
&MESH ID='Mesh08', IJK=66,106,13, XB=70.4,83.6,-9.4,11.8,0.0,2.6, MPI_PROCESS=4/
&MESH ID='Mesh10', IJK=48,147,13, XB=30.4,40.0,0.2,29.6,0.0,2.6, MPI_PROCESS=5/
&MESH ID='Mesh11', IJK=26,131,13, XB=40.0,45.2,0.2,26.4,0.0,2.6, MPI_PROCESS=6/
&MESH ID='Mesh06', IJK=46,130,13, XB=45.2,54.4,-1.4,24.6,0.0,2.6, MPI_PROCESS=6/
&MESH ID='Mesh02-merged', IJK=57,174,13, XB=12.6,24.0,0.2,35.0,0.0,2.6, MPI_PROCESS=7/
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Salah Benkorichi
Nov 3, 2017, 8:26:56 AM11/3/17
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Ok, this is an issue with your environment.
I pressume you're using Linux.
Did you put this line in your .bashrc file? If not, do so and retest it.
source /home/salah/FDS/FDS6/bin/FDSVARS.sh
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Salah Benkorichi
Nov 3, 2017, 8:33:34 AM11/3/17
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After the installation, you should be prompt with a message asking you to put some lines in your .bashrc file.
For me :
export PATH=/home/salah/FDS/FDS6/bin:$PATH
export LD_LIBRARY_PATH=/usr/lib64:/home/salah/FDS/FDS6/bin/LIB64:$LD_LIBRARY_PATH
# number of OpenMPI threads - set to no more than MIN(4,number of cores / 2)
export OMP_NUM_THREADS=4
log off and log in again.
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Salah Benkorichi
Nov 3, 2017, 8:35:42 AM11/3/17
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Also, delete this env that you still have in your .bashrc
#FDS environment -----------------------
export MPIDIST_ETH=/shared/openmpi_64
export MPIDIST_IB=
source ~/.bashrc_fds $MPIDIST_ETH
#FDS -----------------------------------
export MPIDIST_FDS=/opt/FDS/FDS6/bin/openmpi_64
INTEL_SHARED_LIB=$IFORT_COMPILER_LIB/intel64
Salah Benkorichi
Nov 3, 2017, 8:41:16 AM11/3/17
to fds...@googlegroups.com
For me when I run parallel jobs, I set OMP_NUM_THREADS=1.
Here how it should work for you:
$ clear
salah@sbenkorichi /media/salah/Shared Work Area/fds_examples/fds-meshes-error $ mpiexec -np 8 fds test.fds
Mesh 1 is assigned to MPI Process 0
Mesh 2 is assigned to MPI Process 1
Mesh 3 is assigned to MPI Process 1
Mesh 4 is assigned to MPI Process 1
Mesh 5 is assigned to MPI Process 1
Mesh 6 is assigned to MPI Process 1
Mesh 7 is assigned to MPI Process 2
Mesh 8 is assigned to MPI Process 2
Mesh 9 is assigned to MPI Process 3
Mesh 10 is assigned to MPI Process 4
Mesh 11 is assigned to MPI Process 5
Mesh 12 is assigned to MPI Process 6
Mesh 13 is assigned to MPI Process 6
Mesh 14 is assigned to MPI Process 7
Completed Initialization Step 1
Completed Initialization Step 2
Completed Initialization Step 3
Completed Initialization Step 4
Fire Dynamics Simulator
Current Date : November 3, 2017 12:40:10
Version : FDS 6.6.0
Revision : FDS6.6.0-131-g88ae75a-HEAD
Revision Date : Wed Nov 1 16:03:29 2017 -0400
Compiler : Intel ifort 17.0.4
Compilation Date : Nov 01, 2017 21:03:34
MPI Enabled; Number of MPI Processes: 8
OpenMP Enabled; Number of OpenMP Threads: 1
MPI version: 3.1
MPI library version: Intel(R) MPI Library 2017 Update 3 for Linux* OS
Job TITLE :
Job ID string : test
Time Step: 1, Simulation Time: 0.17 s
Time Step: 2, Simulation Time: 0.33 s
Time Step: 3, Simulation Time: 0.50 s
Time Step: 4, Simulation Time: 0.67 s
Try how I run it and report back.
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