Is it possible to also report partial eta-squared in ezANOVA?

[Chuan-Peng Hu]

Hi, Mike,

Thank you very much for providing such as a convenient package for us to do repeated measure ANOVA.

I realized that ezANOVA report the generalized eta-squared as an index of effect size. And this index has been recommended by many researchers.

There is the recommendation that confidence intervals should be also reported along with effect size. But there seems no obvious way to calculate the CIs for generalized eta-square.

So, I think that maybe I can just report all index I can get, include partial eta-squared and it's CIs, as well as generalized eta-squared. Because the CIs of partial eta-squared could be calculated (https://daniellakens.blogspot.co.uk/2014/06/calculating-confidence-intervals-for.html). 

Therefore, I am wondering is there possibility that ez also report the partial eta squared, then the results-reporting could be done very easily.

Thank you again, and looking forward your reply.

[David Braithwaite]

I am wondering about this exact same question. Or does anyone know how to calculate confidence intervals for generalized eta-squared using ezANOVA's output?

[Matt Pontifex]

Here is a way to obtain the partial eta squared:

if (!require(MBESS)) { install.packages("MBESS"); library(MBESS) }

results <- ezANOVA()

results$ANOVA$partialetasquared <- results$ANOVA$SSn/(results$ANOVA$SSn+results$ANOVA$SSd)

loweretasquared <- c()

upperetasquared <- c()

for (cR in 1:nrow(results$ANOVA)) {

  Lims <- conf.limits.ncf(F.value = results$ANOVA$F[cR], conf.level = 0.95, df.1 <- results$ANOVA$DFn[cR], df.2 <- results$ANOVA$DFd[cR])

  Lower.lim <- Lims$Lower.Limit/(Lims$Lower.Limit + df.1 + df.2 + 1)

  Upper.lim <- Lims$Upper.Limit/(Lims$Upper.Limit + df.1 + df.2 + 1)

  if (is.na(Lower.lim)) {

    Lower.lim <- 0

  }

  if (is.na(Upper.lim)) {

    Upper.lim <- 1

  }

  loweretasquared <- c(loweretasquared,Lower.lim)

  upperetasquared <- c(upperetasquared,Upper.lim)

}

results$ANOVA$partialetasquared.lower <- loweretasquared

results$ANOVA$partialetasquared.upper <- upperetasquared

[David Braithwaite]

Thanks, Matt. I recently found a similar method referenced here: http://daniellakens.blogspot.com/2014/06/calculating-confidence-intervals-for.html. That reference appears to be the same as yours in all respects except that it advises using a conf.level of 0.90 instead of 0.95, arguing that a conf.level of 0.90 in this method is equivalent to setting a=.05 (not a=.10) as your standard for significant p values. Any thoughts on that?

[Eduardo Domingos]

The code is loading for me here not it is not outputting any of the results in the console. Do you have any idea of what may be happening?

[Mike Lawrence]

I think you just need to tell it to print at the end:

    print(results$ANOVA)

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Mike Lawrence, PhD

Co-founder & Research Scientist

Axem Neurotechnology

axemneuro.com

~ Certainty is (possibly) folly ~