Exabayes Error in Cipres: Exited with exit code 134

[Debajyoti Kabiraj]

Dear Experts,

It will be an immense help if someone kindly corrects me for the following error.

Command used

exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3

Error :

exabayes: ./src/mcmc/CoupledChains.cpp:383: void CoupledChains::executePart(uint64_t, uint64_t, ParallelSetup&): Assertion `_chains[remoteId].getGeneration() == swap.getGen()' failed.
[comet-29-57:11365] *** Process received signal ***
[comet-29-57:11365] Signal: Aborted (6)
[comet-29-57:11365] Signal code:  (-6)
[comet-29-57:11365] [ 0] /usr/lib64/libpthread.so.0(+0xf5d0)[0x2addd8c725d0]
[comet-29-57:11365] [ 1] /usr/lib64/libc.so.6(gsignal+0x37)[0x2addd8eb5207]
[comet-29-57:11365] [ 2] /usr/lib64/libc.so.6(abort+0x148)[0x2addd8eb68f8]
[comet-29-57:11365] [ 3] /usr/lib64/libc.so.6(+0x2f026)[0x2addd8eae026]
[comet-29-57:11365] [ 4] /usr/lib64/libc.so.6(+0x2f0d2)[0x2addd8eae0d2]
[comet-29-57:11365] [ 5] exabayes[0x442a39]
[comet-29-57:11365] [ 6] exabayes[0x42ba5b]
[comet-29-57:11365] [ 7] exabayes[0x40b48a]
[comet-29-57:11365] [ 8] exabayes[0x40d2e5]
[comet-29-57:11365] [ 9] exabayes[0x40846c]
[comet-29-57:11365] [10] /usr/lib64/libc.so.6(__libc_start_main+0xf5)[0x2addd8ea13d5]
[comet-29-57:11365] [11] exabayes[0x409eaf]
[comet-29-57:11365] *** End of error message ***
/projects/ps-ngbt/home/cipres/ngbw/contrib/tools/bin/exabayes_wrapper_1.5_centos7: line 10: 11365 Aborted                 (core dumped) exabayes $*
srun: error: comet-29-57: task 53: Exited with exit code 134
srun: First task exited 30s ago
srun: tasks 0-52,54-71: running
srun: task 53: exited abnormally
srun: Terminating job step 33840233.0
srun: Job step aborted: Waiting up to 302 seconds for job step to finish.
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9902 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9915 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9911 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9908 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9900 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9919 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9921 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9899 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9910 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9901 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9904 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9903 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9913 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9914 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9917 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9920 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9909 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9905 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  9918 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
slurmstepd: *** STEP 33840233.0 ON comet-07-50 CANCELLED AT 2020-06-02T08:29:09 ***
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29332 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29326 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29329 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29333 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29343 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29325 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2781 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2761 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2771 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2780 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2773 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2778 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29338 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29330 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29327 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2766 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2769 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2783 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2772 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2775 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2777 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2776 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29328 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29324 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29331 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29346 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29334 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2770 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2768 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2774 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29337 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2782 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2764 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29342 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2763 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29341 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3:  2762 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29345 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29339 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29340 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
/projects/ps-ngbt/backend/comet_workspace/NGBW-JOB-EXABAYES_XSEDE-D0BCEC6E49574D8F9A4FB1338B2386FD/./_batch_command.cmdline: line 3: 29335 Killed                  exabayes_wrapper_1.5_centos7 -m DNA -f infile.phy -R 2 -C 2 -s 12345 -q part.txt -n 335_Exa_part -c config.nex -M 3
srun: error: comet-29-57: tasks 48-52,54-66,71: Exited with exit code 137
srun: error: comet-29-57: tasks 67-70: Killed
srun: error: comet-07-50: tasks 0-16,18-20,22: Exited with exit code 137
srun: error: comet-07-50: tasks 17,21,23: Killed
srun: error: comet-17-17: tasks 24-39,41-42,44,46: Exited with exit code 137
srun: error: comet-17-17: tasks 40,43,45,47: Killed

 

Regards,

Debajyoti

[Jing Li Xuan]

Hello Debajyoti,

Have you solved this issue? I encoutered the same problem on my data.

Best,

Jingli

[Alexandros Stamatakis]

Please see the reply by Andre on this issue.

Alexis

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Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.exelixis-lab.org