Error when I try to write tree

[石川昌和]

I am new to ete3.

I try to build tree by using this command

ete3 build -w standard_raxml -n all_mafft.fasta -o output_tree

"all_mafft.fasta" is a nucleotide fasta aligned by Mafft.

But I got error below.

ete3: error: argument --base-config: invalid is_file value: '/auto/user/miniconda3/envs/ete3/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build.cfg'

Is it any problem?

[ziqi deng]

Hi!

the workflow standard_raxml is set to process unaligned sequence.

In your case, you already have aligned sequences, hence it gave errors. It would be better for you to use customized workflow, you can find more information at below

http://etetoolkit.org/cookbook/ete_build_workflows.ipynb

Cheers 

石川昌和 <amuf...@gmail.com> 于2022年3月29日周二 10:24写道：

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