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The non-reference allele (T in the example) is always the effect allele.Hyun.-----------------------------------------------------
Hyun Min Kang, Ph.D.
Associate Professor of Biostatistics
University of Michigan, Ann Arbor
Email : hmk...@umich.edu
On Thu, Apr 16, 2020 at 3:02 AM Carmen F. Bjurstrom <cflbju...@gmail.com> wrote:
--Hi!Does anybody know which of the alleles is the effect allele, after running a single variant test (b.wald) on EPACT?The marker_Id column provides information about the SNP, example (A/T), A being the reference allele and T being the alternative allele, butit is unclear to me, which of the two alleles causes the effect?Grateful for any input. Thank you in advance!
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