The program starts running, however it aborted. Give the error below. Do you have ideal what's wrong with that?
$ ./dose2vcf_v0.5 --dose AFR.ATCG_chr13.phased_imputation.dose.gz --info AFR_combined_imputed.info.gz --out out/fusion.gwas.1kg.imp.chr13
dose2vcf 0.5
(c) 2012 Christian Fuchsberger
WARNING -
Problems encountered parsing command line:
Command line parameter --out is undefined
Command line parameter out/fusion.gwas.1kg.imp.chr13 (#6) ignored
The following parameters are available. Ones with "[]" are in effect:
Available Options
Minimac input options : --dose [AFR.ATCG_chr13.phased_imputation.dose.gz],
--info [AFR_combined_imputed.info.gz]
Impute2 input options : --impute_dose [], --impute_sample [], --chr []
RS mapping table : --rs []
Output Options : --prefix [dose2vcf]
Minimac mode
Load Dosages...
52
Output VCF...Header...Data...dose2vcf_v0.5: ../libStatGen/include/MathVector.h:113: double& Vector::operator[](int):
Assertion `n < dim' failed.
Aborted