fail provisioning on ficus.3 devstack: persmission denied bson

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Rachid ELIDRISSI

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Jun 29, 2017, 9:39:46 AM6/29/17
to General Open edX discussion
Hi,
I installed the ficus.3 version of devstack, all went well, but when I try to re-run vargant provision I get this error: [Errno 13] Permission denied: '/edx/app/edx_ansible/venvs/edx_ansible/lib/python2.7/site-packages/bson/

When I check the permissions in the venv dir I found it as bellow:

ls -l /edx/app/edx_ansible/venvs/edx_ansible/lib/python2.7/site-packages/

total 2476
drwxr-xr-x 17 edx-ansible edx-ansible   4096 Feb  7 15:51 ansible
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 ansible-2.2.0.0.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 appdirs-1.4.0.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  22374 Feb  7 15:50 appdirs.py
-rw-r--r--  1 edx-ansible edx-ansible  20465 Feb  7 15:50 appdirs.pyc
drwxr-xr-x  6 edx-ansible edx-ansible   4096 Feb  7 15:51 awscli
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 awscli-1.10.28.dist-info
drwxr-xr-x 49 edx-ansible edx-ansible   4096 Feb  7 15:51 boto
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 boto-2.33.0.dist-info
drwxr-xr-x  5 edx-ansible edx-ansible   4096 Feb  7 15:51 botocore
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 botocore-1.4.19.dist-info
drwxr-xr-x  2 root        root          4096 Jun 29 12:25 bson
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 cffi
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 cffi-1.9.1.dist-info
-rwxr-xr-x  1 edx-ansible edx-ansible 733736 Feb  7 15:51 _cffi_backend.so
-rw-r--r--  1 root        root         10372 Jun 29 12:24 clonevirtualenv.py
-rw-r--r--  1 root        root         10905 Jun 29 12:24 clonevirtualenv.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 colorama
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 colorama-0.3.3.dist-info
drwxr-xr-x  3 edx-ansible edx-ansible   4096 Feb  7 15:51 concurrent
drwxr-xr-x 10 edx-ansible edx-ansible   4096 Feb  7 15:51 Crypto
drwxr-xr-x  4 edx-ansible edx-ansible   4096 Feb  7 15:51 cryptography
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 cryptography-1.7.2.dist-info
drwxr-xr-x  7 edx-ansible edx-ansible   4096 Feb  7 15:51 datadog
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 datadog-0.8.0.dist-info
drwxr-xr-x  4 edx-ansible edx-ansible   4096 Feb  7 15:51 dateutil
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 decorator-4.0.11.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  15649 Feb  7 15:51 decorator.py
-rw-r--r--  1 edx-ansible edx-ansible  14022 Feb  7 15:51 decorator.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 docopt-0.6.1.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  19946 Feb  7 15:51 docopt.py
-rw-r--r--  1 edx-ansible edx-ansible  23527 Feb  7 15:51 docopt.pyc
drwxr-xr-x  8 edx-ansible edx-ansible   4096 Feb  7 15:51 docutils
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 docutils-0.13.1.dist-info
-rw-r--r--  1 root        root           126 Jun 29 12:24 easy_install.py
-rw-r--r--  1 root        root           315 Jun 29 12:24 easy_install.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 ecdsa
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 ecdsa-0.11.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 enum
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 enum34-1.1.6.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 futures-3.0.5.dist-info
drwxr-xr-x  2 root        root          4096 Jun 29 12:25 gridfs
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 hipchat
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 idna
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 idna-2.2.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 ipaddress-1.0.18.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  80156 Feb  7 15:51 ipaddress.py
-rw-r--r--  1 edx-ansible edx-ansible  75654 Feb  7 15:51 ipaddress.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 jinja2
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 Jinja2-2.8.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 jmespath
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 jmespath-0.9.1.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 markupsafe
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 MarkupSafe-0.23.dist-info
drwxr-xr-x  3 edx-ansible edx-ansible   4096 Feb  7 15:51 MySQLdb
-rw-r--r--  1 edx-ansible edx-ansible   2352 Feb  7 15:51 _mysql_exceptions.py
-rw-r--r--  1 edx-ansible edx-ansible   4255 Feb  7 15:51 _mysql_exceptions.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 MySQL_python-1.2.5.dist-info
-rwxr-xr-x  1 edx-ansible edx-ansible 170448 Feb  7 15:51 _mysql.so
drwxr-xr-x 12 edx-ansible edx-ansible   4096 Feb  7 15:51 networkx
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 networkx-1.11.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 packaging
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 packaging-16.8.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 paramiko
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 paramiko-2.0.2.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 pathlib2-2.1.0.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  51006 Feb  7 15:51 pathlib2.py
-rw-r--r--  1 edx-ansible edx-ansible  52465 Feb  7 15:51 pathlib2.pyc
drwxr-xr-x  5 root        root          4096 Jun 29 12:24 pbr
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 pbr-3.1.1.dist-info
drwxr-xr-x 10 root        root          4096 Jun 29 12:24 pip
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 pip-8.1.2.dist-info
drwxr-xr-x  4 root        root          4096 Jun 29 12:24 pkg_resources
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 prettytable-0.7.2.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  54204 Feb  7 15:51 prettytable.py
-rw-r--r--  1 edx-ansible edx-ansible  51715 Feb  7 15:51 prettytable.pyc
drwxr-xr-x  5 edx-ansible edx-ansible   4096 Feb  7 15:51 pyasn1
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 pyasn1-0.2.2.dist-info
drwxr-xr-x  3 edx-ansible edx-ansible   4096 Feb  7 15:51 pycparser
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 pycparser-2.17.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 pycrypto-2.6.1.dist-info
drwxr-xr-x  2 root        root          4096 Jun 29 12:25 pymongo
drwxr-xr-x  2 root        root          4096 Jun 29 12:25 pymongo-2.7.2.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 pyparsing-2.1.10.dist-info
-rw-r--r--  1 edx-ansible edx-ansible 229867 Feb  7 15:50 pyparsing.py
-rw-r--r--  1 edx-ansible edx-ansible 224471 Feb  7 15:50 pyparsing.pyc
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 python_dateutil-2.6.0.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 python_simple_hipchat-0.2.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 PyYAML-3.12.dist-info
drwxr-xr-x  3 edx-ansible edx-ansible   4096 Feb  7 15:51 requests
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 requests-2.9.1.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 rsa
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 rsa-3.3.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 s3transfer
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 s3transfer-0.0.1.dist-info
drwxr-xr-x  4 root        root          4096 Jun 29 12:24 setuptools
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 setuptools-24.0.3.dist-info
drwxr-xr-x  3 edx-ansible edx-ansible   4096 Feb  7 15:51 simplejson
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 simplejson-3.10.0.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 six-1.10.0.dist-info
-rw-r--r--  1 edx-ansible edx-ansible  30098 Feb  7 15:50 six.py
-rw-r--r--  1 edx-ansible edx-ansible  29545 Feb  7 15:50 six.pyc
drwxr-xr-x  5 root        root          4096 Jun 29 12:24 stevedore
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 stevedore-1.23.0.dist-info
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 virtualenv-15.0.2.dist-info
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 virtualenv_clone-0.2.6.dist-info
-rw-r--r--  1 root        root         99115 Jun 29 12:24 virtualenv.py
-rw-r--r--  1 root        root         86579 Jun 29 12:24 virtualenv.pyc
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 virtualenv_support
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 virtualenvwrapper
drwxr-xr-x  2 root        root          4096 Jun 29 12:24 virtualenvwrapper-4.7.1.dist-info
-rw-r--r--  1 root        root           338 Jun 29 12:24 virtualenvwrapper-4.7.1-py3.3-nspkg.pth
drwxr-xr-x  5 edx-ansible edx-ansible   4096 Feb  7 15:50 wheel
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:50 wheel-0.30.0a0.dist-info
drwxr-xr-x  2 edx-ansible edx-ansible   4096 Feb  7 15:51 yaml

Could you please help me to fix this issue?

Best regards,
Rachid

Jeremy Bowman

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Jun 29, 2017, 10:28:41 AM6/29/17
to edx-...@googlegroups.com
I also recently hit this problem when recreating a Vagrant devstack.  In my case, the problem turned out to be that the first attempt at provisioning had failed while checking out edx-platform, which had left the file system in a state that Ansible didn't expect during re-provisioning attempts.  I fixed it by deleting the VM with "vagrant destroy" and trying again; the next time, it successfully got through the entire provisioning process.  It seems like this only happens occasionally, when a network problem or similar error interrupts the normal provisioning process.

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Jeremy Bowman
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