Dynasim issues (qsub on newer MATLAB versions and dsPlotFR)

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Wei, Jingjin

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May 31, 2019, 11:26:20 AM5/31/19
to DynaSim Users
Two issues in dynasim:

  1. qsub doesn't work with newer versions of MATLAB
    1. meaning 2018a and 2018b. 
    2. 2018b: 
      Error message:
      Error using dsCheckOptions (line 152)
      parameter 'cluster_matlab_version' value must be one of the following: { '2009b'
      '2013a' '2014a' '2015a' '2016a' '2016b' '2017a' '2017b' '2018a' }
    3. 2018a:
      qsub: /lib64/libz.so.1: version `ZLIB_1.2.3.3' not found (required by /share/pkg/matlab/2018a/install/bin/glnxa64/libxml2.so.2)

  2. dsPlotFR: specify 'plot_type' doesn't seem to have any effect, you always get the same plot which is everything. Also happen in dsPlotFR2 for me.
Best,
Jingjin

Erik Roberts

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May 31, 2019, 11:41:54 AM5/31/19
to Wei, Jingjin, DynaSim Users
add 2018b to the dsCheckOptions file to try using it. We don’t have it there because it’s untested.

try entering into terminal:
```
module load zlib/1.2.8
module load matlab/2018b
matlab
```

plot_type not implemented yet in dsPlotFR

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