Upgrade Space 5.9 to 6.3 - Errors with Maven Build

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R W

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Jan 23, 2020, 3:08:52 PM1/23/20

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Hi Everyone,

I'm supporting the DSpace upgrade process from version 5.9 to 6.3. I have followed the upgrade instructions and ported over all my customized code/config and have unfortunately run into errors during the maven building process. It is erroring out at the "DSpace Kernel :: API and Implementation" level. I have searched threads on this google group and some have suggested it's permission related but I have double checked all folder permissions, even the root directory for my DSpace instance. Prior to this issue, I had an error for dependencies.dependency.version' for javax.servlet:jsp-api:jar is missing which I resolved by adding <version></version> tags to the dependencies in the pom.xml file. What have I done wrong? Does anyone have any suggestions of how to move forward from here? Please and thank you for reading/suggesting.

Thank you,

Rachel

Pom.xml File from /dspace/modules/jspui/pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>org.dspace.modules</groupId>
    <artifactId>jspui</artifactId>
    <packaging>war</packaging>
    <name>DSpace JSP-UI :: Local Customizations</name>
    <description>
        This project allows you to overlay your own local JSP-UI customizations
        on top of the default JSP-UI web application provided with DSpace.
    </description>

    <parent>
        <groupId>org.dspace</groupId>
        <artifactId>modules</artifactId>
        <version>6.3</version>
        <relativePath>..</relativePath>
    </parent>

    <properties>
        <!-- This is the path to the root [dspace-src] directory. -->
        <root.basedir>${basedir}/../../..</root.basedir>
    </properties>

    <profiles>
        <profile>
            <id>oracle-support</id>
            <activation>
                <property>
                    <name>db.name</name>
                    <value>oracle</value>
                </property>
            </activation>
            <dependencies>
                <dependency>
                    <groupId>com.oracle</groupId>
                    <artifactId>ojdbc6</artifactId>
                </dependency>
            </dependencies>
        </profile>
    </profiles>
    
    <build>
        <filters>
            <!-- Filter using the properties file defined by dspace-parent POM -->
            <filter>${filters.file}</filter>
        </filters>
        <plugins>
            <!-- Unpack the "additions" module into our target directory,
                 so that any custom classes in that module can be included
                 into this WAR's WEB-INF/classes (see maven-war-plugin below). -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-dependency-plugin</artifactId>
                <executions>
                    <execution>
                        <id>unpack</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>unpack-dependencies</goal>
                        </goals>
                        <configuration>
                            <includeGroupIds>org.dspace.modules</includeGroupIds>
                            <includeArtifactIds>additions</includeArtifactIds>
                            <!--NOTE: by default this will also unpack transitive dependencies. To disable, uncomment this next line:
                            <excludeTransitive>true</excludeTransitive>
                            -->
                            <outputDirectory>${project.build.directory}/additions</outputDirectory>
                            <excludes>META-INF/**</excludes>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-war-plugin</artifactId>
                <configuration>
                    <archiveClasses>false</archiveClasses>
                    <!-- Filter the web.xml (needed for IDE compatibility/debugging) -->
                    <filteringDeploymentDescriptors>true</filteringDeploymentDescriptors>
                    <!-- Copy any 'additions' (see m-dependency-p above) into WEB-INF/classes.
                         This ensures they are loaded prior to dependencies in WEB-INF/lib
                         (per Servlet 3.0 spec, section 10.5), and allows them to override
                         default classes in this WAR -->
                    <webResources>
                        <resource>
                            <filtering>true</filtering>
                            <directory>
                                ${basedir}/src/main/webapp
                            </directory>
                            <includes>
                                <include>WEB-INF/web.xml</include>
                            </includes>
                        </resource>
                    </webResources>
                    <overlays>
                        <overlay />
                        <overlay>
                            <groupId>org.dspace</groupId>
                            <artifactId>dspace-jspui</artifactId>
                            <type>war</type>
                        </overlay>
                    </overlays>
                </configuration>
                <executions>
                    <execution>
                        <phase>prepare-package</phase>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>

    <dependencies>

        <dependency>
            <groupId>org.dspace.modules</groupId>
            <artifactId>additions</artifactId>
            <version>1.0</version>
        </dependency>

        <dependency>
            <groupId>org.dspace</groupId>
            <artifactId>dspace-jspui</artifactId>
            <version>1.0</version>
            <type>war</type>
        </dependency>

        <dependency>
            <groupId>org.dspace</groupId>
            <artifactId>dspace-jspui</artifactId>
            <version>1.0</version>
            <type>jar</type>
            <classifier>classes</classifier>
        </dependency>

        <dependency>
           <groupId>javax.servlet</groupId>
           <artifactId>servlet-api</artifactId>
           <version>1.0</version>
           <scope>provided</scope>
        </dependency>

        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>jsp-api</artifactId>
            <version>1.0</version>
            <scope>provided</scope>
        </dependency>
    </dependencies>

</project>

Maven Build Errors

INFO] 100 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] DSpace Parent Project .............................. SUCCESS [ 0.853 s]
[INFO] DSpace Services Framework :: API and Implementation SUCCESS [ 4.778 s]
[INFO] DSpace Kernel :: API and Implementation ............ FAILURE [ 15.044 s]
[INFO] DSpace Addon Modules ............................... SKIPPED
[INFO] DSpace Kernel :: Additions and Local Customizations SKIPPED
[INFO] DSpace XML-UI (Manakin) ............................ SKIPPED
[INFO] DSpace XML-UI (Manakin) :: Local Customizations .... SKIPPED
[INFO] DSpace JSP-UI :: Local Customizations .............. SKIPPED
[INFO] DSpace RDF ......................................... SKIPPED
[INFO] DSpace RDF :: Local Customizations ................. SKIPPED
[INFO] DSpace REST :: API and Implementation .............. SKIPPED
[INFO] DSpace REST :: Local Customizations ................ SKIPPED
[INFO] DSpace SWORD ....................................... SKIPPED
[INFO] DSpace SWORD :: Local Customizations ............... SKIPPED
[INFO] DSpace SWORD v2 .................................... SKIPPED
[INFO] DSpace SWORD v2 :: Local Customizations ............ SKIPPED
[INFO] Apache Solr Webapp ................................. SKIPPED
[INFO] DSpace SOLR :: Local Customizations ................ SKIPPED
[INFO] DSpace OAI-PMH ..................................... SKIPPED
[INFO] DSpace OAI-PMH :: Local Customizations ............. SKIPPED
[INFO] DSpace Assembly and Configuration .................. SKIPPED
[INFO] DSpace JSP-UI ...................................... SKIPPED
[INFO] DSpace XML-UI Mirage2 Theme ........................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 21.608 s
[INFO] Finished at: 2020-01-23T13:10:40-05:00
[INFO] Final Memory: 52M/455M

[ERROR] COMPILATION ERROR :

[INFO] -------------------------------------------------------------

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[15,1] package org.apache.commons.dbcp does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[16,31] package org.apache.commons.pool does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[17,36] package org.apache.commons.pool.impl does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[18,36] package org.apache.commons.pool.impl does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[19,36] package org.apache.commons.pool.impl does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[12,36] package org.apache.pdfbox.exceptions does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[16,38] package org.apache.pdfbox.pdmodel.edit does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[309,67] cannot find symbol

symbol: class COSVisitorException

location: class org.dspace.disseminate.CitationDocument

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[327,106] cannot find symbol

symbol: class COSVisitorException

location: class org.dspace.disseminate.CitationDocument

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[413,48] cannot find symbol

symbol: class PDPageContentStream

location: class org.dspace.disseminate.CitationDocument

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/disseminate/CitationDocument.java:[511,47] cannot find symbol

symbol: class PDPageContentStream

location: class org.dspace.disseminate.CitationDocument

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[17,31] package org.apache.commons.pool does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[18,31] package org.apache.commons.pool does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[19,31] package org.apache.commons.pool does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[20,36] package org.apache.commons.pool.impl does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[164,51] cannot find symbol

symbol: class KeyedPoolableObjectFactory

location: class org.dspace.event.EventManager

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[43,42] package GenericKeyedObjectPool does not exist

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/event/EventManager.java:[46,20] cannot find symbol

symbol: class KeyedObjectPool

location: class org.dspace.event.EventManager

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/dao/ItemDAOOracle.java:[21,36] no interface expected here

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/versioning/VersionHistoryImpl.java:[24,44] interface expected here

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/versioning/VersionImpl.java:[25,37] interface expected here

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/dao/ItemDAOPostgres.java:[21,38] no interface expected here

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/ItemIterator.java:[131,47] cannot find symbol

symbol: method fromCache(java.lang.Class<org.dspace.content.Item>,int)

location: variable ourContext of type org.dspace.core.Context

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/ItemIterator.java:[139,28] cannot find symbol

symbol: method find(org.dspace.core.Context,int)

location: class org.dspace.content.Item

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/ItemIterator.java:[224,47] cannot find symbol

symbol: method fromCache(java.lang.Class<org.dspace.content.Item>,int)

location: variable ourContext of type org.dspace.core.Context

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/content/ItemIterator.java:[233,24] constructor Item in class org.dspace.content.Item cannot be applied to given types;

required: no arguments

found: org.dspace.core.Context,org.dspace.storage.rdbms.TableRow

reason: actual and formal argument lists differ in length

[ERROR] /home/admin/t-space/dspace-api/src/main/java/org/dspace/storage/rdbms/DataSourceInit.java:[75,13] cannot find symbol

symbol: class ObjectPool