Dear Frank,
I am running the src step but am having problems with it, see below. Can you make out why it won't work?
Thank you,
Kind wishes,
Barbara
singularity exec /usr/users/kreilkamp/dsistudio_latest.sif dsi_studio --action=src --source=C_AHKP99A_DTI_B0_mean_brain_output_dwi_epicorr.nii --bval=C_AHKP99A_DTI.bvals --bvec=C_AHKP99A_DTI_eddy_eddy_rotated_bvecs --output=C_AHKP99A.src.gz
WARNING: underlay of /usr/share/zoneinfo/Etc/UTC required more than 50 (83) bind mounts
ERROR: ld.so: object 'libdlfaker.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object 'libvglfaker.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
DSI Studio Nov 3 2020, Fang-Cheng Yeh
source=C_AHKP99A_DTI_B0_mean_brain_output_dwi_epicorr.nii
action=src
output=C_AHKP99A.src.gz
image=C_AHKP99A_DTI_B0_mean_brain_output_dwi_epicorr.nii
loading
invalid file format
Warning: --bval is not used. Please check command line syntax.
Warning: --bvec is not used. Please check command line syntax.