Dear Frank,
I've been using DSI Studio for a few years. I try not to update it in the middle of the project to ensure consistency of results. My version of software had been compiled on Jun 8, 2021 until I updated it this week to version Chen (Jan 23, 2023).
I'm impressed by the number of new features and improvements. In particular, the tractography is running much faster. However, the streamlines computed for the same image look very different now.
For example, the mouse optic pathway that I generated with the older version:
Looks now like a single streamline:
The number of generated tracts, though, is 2527. I exported them to the text file and found out that these are 2527 copies of the exact same streamline (all coordinates are the same).
I also double checked that my tracking parameters were identical in both versions (including the parameter_id):
OLD VERSION
NEW VERSION
A deterministic fiber tracking algorithm (Yeh et al., PLoS ONE 8(11): e80713, 2013) was used.
A deterministic fiber tracking algorithm (Yeh et al., PLoS ONE 8(11): e80713, 2013) was used.
An ROI was placed at rl (1.1e+02,70,96) with a volume size of 0.67 mm cubic.
An ROI was placed at rl (1.1e+02,70,96) .
A seeding region was placed at chiasm.
A seeding region was placed at chiasm (86,99,83) .
An ROI was placed at lgn_l (1.1e+02,1.3e+02,1.1e+02) with a volume size of 0.67 mm cubic.
An ROI was placed at lgn_l (1.1e+02,1.3e+02,1.1e+02) .
An ROA was placed at roa (86,1.1e+02,1.1e+02) with a volume size of 31 mm cubic.
An ROA was placed at roa (86,1.1e+02,1.1e+02) .
The anisotropy threshold was 0.01.
The anisotropy threshold was 0.01.
The angular threshold was 60 degrees.
The angular threshold was 60 degrees.
The step size was 0.05 mm.
The step size was 0.05 mm.
The fiber trajectories were smoothed by averaging the propagation direction with 20% of the previous direction.
The fiber trajectories were smoothed by averaging the propagation direction with 20% of the previous direction.
Tracks with length shorter than 1 or longer than 15 mm were discarded.
Tracks with length shorter than 1 or longer than 15 mm were discarded.
A total of 10000000 seeds were placed.
A total of 10000000 seeds were placed.
parameter_id=0AD7233C9A99193Fba3FCDCC4C3DCDCC4C3Eb803Fb7041809698dcaCDCC4C3Ec
parameter_id=0AD7233C9A99193Fba3FCDCC4C3DCDCC4C3Eb803Fb7041809698dcaCDCC4C3Ec
Could you please tell me where these changes in streamlines come from? Is it possible to obtain similar results (to the ones I had before) on the new version of DSI Studio?
Best,
Patryk