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Normally I hate ads but mostly because people sacrifice content for income. Seeing as you have good intentions for it, I don't think that I would mind small and unobtrusive. (read consistently positioned and not popup/high zindex-based)
Normally, I'd avoid clicking on an ad just due to the fact that it was shoved in my face but, again, being familiar with you, I'd probably even make it a point to click them!
I can't really speak for people who may just happen along it but I wouldn't mind it. Especially if it may further some research!
Alex
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