Install Problems on Debian Stretch: pip3: no such file or directory exists

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Colleen Kellam

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Jan 12, 2018, 11:34:34 AM1/12/18
to Dedalus Users
I have spent the last three days trying to get Dedalus installed on my machine without success.  I am very new to Linux, so I'm sure my problems are ignorance/user error, but I would very much appreciate some help.  I've tried installation using the script and manually, but nothing has worked.  I've deleted the files and started over a few times, so this question is specifically regarding the install script installation method.  

When trying to use the install script, I encounter the following error:
---

Installing FFTW.
pip installing cython.
********************************************
        FAILURE REPORT:
********************************************

rm -rf .libs _libs
rm -f *.o
rm -f *.lo
make[1]: Leaving directory '/home/seventyxseven/dedalus/src/fftw-3.3.4/tools'
Making clean in m4
make[1]: Entering directory '/home/seventyxseven/dedalus/src/fftw-3.3.4/m4'
rm -rf .libs _libs
rm -f *.lo
make[1]: Leaving directory '/home/seventyxseven/dedalus/src/fftw-3.3.4/m4'
install.sh: line 718: /home/seventyxseven/dedalus/bin/pip3: No such file or directory

---

I've read through several other threads on this group and saw the explanation for this error is that SSL headers must be installed, but I did run the apt-get script for the required packages.  After executing the apt-get install line for the required packages, everything installed fine except for libzmq-dev, which gave me the following error:
---

Package libzmq-dev is not available, but is referred to by another package.
This may mean that the package is missing, has been obsoleted, or
is only available from another source
---

I've made sure my system is updated/updated, but I still get the error.  I  found libzmq3-dev and installed that package without a problem, but still can't get libzmq-dev, nor do I know if that's the problem with the installation.  

Install log is attached.  I'm so sorry if this question has been asked/answered but I greatly appreciate any help/assistance.

Colleen


dedalus_install.log

Jeffrey S. Oishi

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Jan 13, 2018, 12:28:39 PM1/13/18
to dedalu...@googlegroups.com
Hi Collen,

Thanks for the detailed report! I was able to track this down to a problem with the SSL headers in Debian 9 and the (old) version of python we were using. I've bumped the python version to 3.6.3, the most recent one, and this seems to fix the problem on a fresh Debian 9 install. 

Also, note libzmq-dev is no longer required, so you can ignore the fact that you can't install that package.

Please try the most recent version of the install script, 


and let me know if you have any further problems.

thanks,

Jeff

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Colleen Kellam

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Jan 13, 2018, 1:29:12 PM1/13/18
to Dedalus Users
Jeff,

You're my hero - the new script works perfectly.  Thank you so much for getting back to me so quickly!

Colleen
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