Building error

[Naren Vohra]

Hello, 

I am trying to install dealii on a Linux system and I get the following error:

/Downloads/dealii-9.3.2/include/deal.II/base/symmetric_tensor.templates.h:113:39:   in constexpr expansion of ‘dealii::determinant<3, float>(B)’

/Downloads/dealii-9.3.2/include/deal.II/base/symmetric_tensor.templates.h:113:43: internal compiler error: Segmentation fault

       const Number tmp_2 = determinant(B) / 2.0;

                                           ^

Please submit a full bug report,

with preprocessed source if appropriate.

See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.

source/base/CMakeFiles/obj_base_release.dir/build.make:1223: recipe for target 'source/base/CMakeFiles/obj_base_release.dir/symmetric_tensor.cc.o' failed

make[2]: *** [source/base/CMakeFiles/obj_base_release.dir/symmetric_tensor.cc.o] Error 1

CMakeFiles/Makefile2:2078: recipe for target 'source/base/CMakeFiles/obj_base_release.dir/all' failed

make[1]: *** [source/base/CMakeFiles/obj_base_release.dir/all] Error 2

Makefile:135: recipe for target 'all' failed

make: *** [all] Error 2

Could someone please help me with this?

[Daniel Arndt]

Naren,

What compiler are you using and how are you configuring deal.II (What does detailed.log look like)?

Best,

Daniel

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[Naren Vohra]

Dear Daniel, 

Here is the info from detailed.log: 

#  deal.II configuration:
#        CMAKE_BUILD_TYPE:       DebugRelease
#        BUILD_SHARED_LIBS:      ON
#        CMAKE_INSTALL_PREFIX:   /usr/local
#        CMAKE_SOURCE_DIR:       /home/naren/Downloads/dealii-9.3.2
#                                (version 9.3.2)
#        CMAKE_BINARY_DIR:       /home/naren/Downloads/dealii-build
#        CMAKE_CXX_COMPILER:     GNU 5.4.0 on platform Linux x86_64
#                                /usr/bin/c++
#        C++ language standard:  C++14
#        CMAKE_C_COMPILER:       /usr/bin/cc
#        CMAKE_Fortran_COMPILER: /usr/bin/gfortran
#        CMAKE_GENERATOR:        Unix Makefiles
#
#  Base configuration (prior to feature configuration):
#        DEAL_II_CXX_FLAGS:            -pedantic -fPIC -Wall -Wextra -Wmissing-braces -Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch -Wsynth -Wwrite-strings -Wno-deprecated-declarations -Wno-literal-suffix -Wno-psabi -fopenmp-simd -std=c++14
#        DEAL_II_CXX_FLAGS_RELEASE:    -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing -Wno-unused-local-typedefs
#        DEAL_II_CXX_FLAGS_DEBUG:      -O0 -ggdb -Wa,--compress-debug-sections
#        DEAL_II_LINKER_FLAGS:         -Wl,--as-needed -rdynamic -fuse-ld=gold -lpthread
#        DEAL_II_LINKER_FLAGS_RELEASE: 
#        DEAL_II_LINKER_FLAGS_DEBUG:   -ggdb
#        DEAL_II_DEFINITIONS:          
#        DEAL_II_DEFINITIONS_RELEASE:  
#        DEAL_II_DEFINITIONS_DEBUG:    DEBUG
#        DEAL_II_USER_DEFINITIONS:     
#        DEAL_II_USER_DEFINITIONS_REL: 
#        DEAL_II_USER_DEFINITIONS_DEB: DEBUG
#        DEAL_II_INCLUDE_DIRS          
#        DEAL_II_BUNDLED_INCLUDE_DIRS: 
#        DEAL_II_LIBRARIES:            
#        DEAL_II_LIBRARIES_RELEASE:    
#        DEAL_II_LIBRARIES_DEBUG:      
#        DEAL_II_VECTORIZATION_WIDTH_IN_BITS: 128
#        DEAL_II_HAVE_CXX14
#
#  Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):
#      ( DEAL_II_WITH_64BIT_INDICES = OFF )
#      ( DEAL_II_WITH_ADOLC = OFF )
#      ( DEAL_II_WITH_ARBORX = OFF )
#        DEAL_II_WITH_ARPACK set up with external dependencies
#            ARPACK_LINKER_FLAGS = 
#            ARPACK_LIBRARIES = /usr/lib/libarpack.so;-lm;-ldl;/usr/lib/libopenblas.so
#      ( DEAL_II_WITH_ASSIMP = OFF )
#        DEAL_II_WITH_BOOST set up with external dependencies
#            BOOST_VERSION = 1.64.0
#            BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
#            BOOST_DEFINITIONS = BOOST_NO_AUTO_PTR
#            BOOST_USER_DEFINITIONS = BOOST_NO_AUTO_PTR
#            BOOST_INCLUDE_DIRS = /usr/local/include
#            BOOST_USER_INCLUDE_DIRS = /usr/local/include
#            BOOST_LIBRARIES = /usr/local/lib/libboost_iostreams.so;/usr/local/lib/libboost_serialization.so;/usr/local/lib/libboost_system.so;/usr/local/lib/libboost_thread.so;/usr/local/lib/libboost_regex.so;/usr/local/lib/libboost_chrono.so;/usr/local/lib/libboost_date_time.so;/usr/local/lib/libboost_atomic.so
#        DEAL_II_WITH_COMPLEX_VALUES = ON
#      ( DEAL_II_WITH_CUDA = OFF )
#      ( DEAL_II_WITH_GINKGO = OFF )
#      ( DEAL_II_WITH_GMSH = OFF )
#      ( DEAL_II_WITH_GSL = OFF )
#      ( DEAL_II_WITH_HDF5 = OFF )
#      ( DEAL_II_WITH_KOKKOS = OFF )
#        DEAL_II_WITH_LAPACK set up with external dependencies
#            LAPACK_WITH_64BIT_BLAS_INDICES = OFF
#            LAPACK_LINKER_FLAGS = 
#            LAPACK_INCLUDE_DIRS = 
#            LAPACK_USER_INCLUDE_DIRS = 
#            LAPACK_LIBRARIES = -lm;-ldl;/usr/lib/libopenblas.so
#      ( DEAL_II_WITH_METIS = OFF )
#      ( DEAL_II_WITH_MPI = OFF )
#        DEAL_II_WITH_MUPARSER set up with bundled packages
#            MUPARSER_BUNDLED_INCLUDE_DIRS = /home/naren/Downloads/dealii-9.3.2/bundled/muparser_v2_2_4//include
#      ( DEAL_II_WITH_OPENCASCADE = OFF )
#      ( DEAL_II_WITH_P4EST = OFF )
#      ( DEAL_II_WITH_PETSC = OFF )
#      ( DEAL_II_WITH_SCALAPACK = OFF )
#      ( DEAL_II_WITH_SLEPC = OFF )
#      ( DEAL_II_WITH_SUNDIALS = OFF )
#      ( DEAL_II_WITH_SYMENGINE = OFF )
#        DEAL_II_WITH_TBB set up with bundled packages
#            TBB_CXX_FLAGS = -Wno-parentheses
#            TBB_BUNDLED_INCLUDE_DIRS = /home/naren/Downloads/dealii-9.3.2/bundled/tbb-2018_U2/include
#            TBB_LIBRARIES = dl
#      ( DEAL_II_WITH_TRILINOS = OFF )
#        DEAL_II_WITH_UMFPACK set up with external dependencies
#            UMFPACK_VERSION = 5.7.1
#            UMFPACK_LINKER_FLAGS = 
#            UMFPACK_INCLUDE_DIRS = /usr/include/suitesparse
#            UMFPACK_USER_INCLUDE_DIRS = /usr/include/suitesparse
#            UMFPACK_LIBRARIES = /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libsuitesparseconfig.so;/usr/lib/x86_64-linux-gnu/libamd.so;-lm;-ldl;/usr/lib/libopenblas.so;rt
#        DEAL_II_WITH_ZLIB set up with external dependencies
#            ZLIB_VERSION = 1.2.8
#            ZLIB_INCLUDE_DIRS = /usr/include
#            ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so
#
#  Component configuration:
#      ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
#        DEAL_II_COMPONENT_EXAMPLES
#      ( DEAL_II_COMPONENT_PACKAGE = OFF )
#      ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )

Thank you, 

Naren Vohra

[Wolfgang Bangerth]

On 11/9/21 4:23 PM, Naren Vohra wrote:
>
> #        CMAKE_CXX_COMPILER:     GNU 5.4.0 on platform Linux x86_64
> #                                /usr/bin/c++

Naren -- I'm not sure any of us still test with this compiler. It is by
now 5 years old (the whole 5.x release branch is in fact 6 years old),
and it is quite possible that that compilers has bugs that manifest with
our code base.

That leaves you with two options:
* You upgrade your compiler to something more recent.
* You can try to edit the symmetric_tensor.h file and remove the
occurrence of DEAL_II_CONSTEXPR in front of the determinant() function.
I don't know whether that's going to lead to downstream problems, but it
might be worth trying.

Best
W.

--
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Wolfgang Bangerth email: bang...@colostate.edu
www: http://www.math.colostate.edu/~bangerth/