Installation stopped

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yuesu jin

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Jul 22, 2020, 7:23:10 PM7/22/20
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Dear Deal.II team, 

  I am installing the deal.ii on a new cluster. The compiling process stopped at 62%. 

[ 62%] Building CXX object source/numerics/CMakeFiles/obj_numerics_debug.dir/vector_tools_project_qpmf.cc.o
[ 62%] [ 62%] Building CXX object source/fe/CMakeFiles/obj_fe_debug.dir/mapping_q1_eulerian.cc.o
Building CXX object source/fe/CMakeFiles/obj_fe_debug.dir/mapping_q_eulerian.cc.o
[ 62%] Built target obj_fe_debug
[ 62%] Built target obj_numerics_debug

The last few lines are:

/home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/index_set.h: In member function ‘dealii::IndexSet::IntervalIterator dealii::IndexSet::IntervalIterator::operator++(int)’:
/home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/index_set.h:1192:44: note: synthesized method ‘dealii::IndexSet::IntervalIterator::IntervalIterator(const dealii::IndexSet::IntervalIterator&)’ first required here
   const IndexSet::IntervalIterator iter = *this;
                                            ^
In file included from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/lac/vector.h:24:0,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/lac/vector_memory.h:26,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/lac/lapack_full_matrix.h:27,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/tensor.h:29,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/point.h:23,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/quadrature.h:22,
                 from /home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/quadrature_lib.h:22,
                 from /home/yjin6/DEALII/dealii-9.2.0/source/fe/mapping_q_eulerian.cc:16:
/home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/index_set.h:640:5: warning: unused parameter ‘other’ [-Wunused-parameter]
     IntervalIterator(const IntervalIterator &other) = default;
     ^
/home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/index_set.h: In member function ‘dealii::IndexSet::IntervalIterator dealii::IndexSet::IntervalIterator::operator++(int)’:
/home/yjin6/DEALII/dealii-9.2.0/include/deal.II/base/index_set.h:1192:44: note: synthesized method ‘dealii::IndexSet::IntervalIterator::IntervalIterator(const dealii::IndexSet::IntervalIterator&)’ first required here
   const IndexSet::IntervalIterator iter = *this;
                                            ^
make: *** [all] Error 2

Could you give me some instructions about that? Thank you!
--
Yuesu Jin,
Ph.D student,
University of Houston,
College of Natural Sciences and Mathematics,
Department of Earth and Atmospheric Sciences,
Houston, Texas 77204-5008


Timo Heister

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Jul 22, 2020, 10:28:16 PM7/22/20
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Yuesu Jin,

the error message should be higher up in the output. To see them more
clearly, you can compile again with "make -j 1". What compiler and
what version of deal.II is this? (look at your summary.log)
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--
Timo Heister
http://www.math.clemson.edu/~heister/

yuesu jin

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Jul 22, 2020, 11:26:05 PM7/22/20
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Dear Timo,
 The configuration in summary.log file is:

deal.II configuration:
#        CMAKE_BUILD_TYPE:       DebugRelease
#        BUILD_SHARED_LIBS:      ON
#        CMAKE_INSTALL_PREFIX:   /home/yjin6/DEALII/main
#        CMAKE_SOURCE_DIR:       /home/yjin6/DEALII/dealii-9.2.0
#                                (version 9.2.0)
#        CMAKE_BINARY_DIR:       /home/yjin6/DEALII/dealii-9.2.0/build
#        CMAKE_CXX_COMPILER:     GNU 4.8.5 on platform Linux x86_64
#                                /usr/bin/c++

And error message is:

/home/yjin6/DEALII/dealii-9.2.0/build/source/dofs/dof_tools_sparsity.inst:12118:27:   required from here
/home/yjin6/DEALII/dealii-9.2.0/source/dofs/dof_tools_sparsity.cc:1352:55: error: no matching function for call to ‘make_flux_sparsity_pattern(const dealii::hp::DoFHandler<3, 3>&, dealii::BlockDynamicSparsityPattern&, dealii::AffineConstraints<double>&, const bool&, const dealii::Table<2, dealii::DoFTools::Coupling>&, const dealii::Table<2, dealii::DoFTools::Coupling>&, const subdomain_id&, <unresolved overloaded function type>)’
/home/yjin6/DEALII/dealii-9.2.0/source/dofs/dof_tools_sparsity.cc:1352:55: note: candidates are:
/home/yjin6/DEALII/dealii-9.2.0/source/dofs/dof_tools_sparsity.cc:689:3: note: template<class DoFHandlerType, class SparsityPatternType> void dealii::DoFTools::make_flux_sparsity_pattern(const DoFHandlerType&, SparsityPatternType&)
   make_flux_sparsity_pattern(const DoFHandlerType &dof,
   ^

To view this discussion on the web visit https://groups.google.com/d/msgid/dealii/CAMRj59GgLfcnyr_08DJmGBffCfDDJ1Atgqu2mvtKJR6rkDbZCA%40mail.gmail.com.

Bruno Turcksin

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Jul 23, 2020, 8:57:27 AM7/23/20
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Yuesu Lin,

Do you have access to a newer compiler? gcc 4.8.5 is very old.

Best,

Bruno
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--
Timo Heister
http://www.math.clemson.edu/~heister/

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yuesu jin

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Jul 23, 2020, 12:56:47 PM7/23/20
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Dear Bruno, 
  Ok, I will try a new gcc for compilation. Thank you!

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--
Timo Heister
http://www.math.clemson.edu/~heister/

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--
Yuesu Jin,
Ph.D student,
University of Houston,
College of Natural Sciences and Mathematics,
Department of Earth and Atmospheric Sciences,
Houston, Texas 77204-5008

--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en
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yuesu jin

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Jul 23, 2020, 3:42:40 PM7/23/20
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Dear all,
 The problem has been solved. The GCC version was too old to compile the new version of deal.ii. I changed the gcc to a newer version which gave a very good result. Thanks!
Best regards
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