Problems installing deal.II 9.1.1

[Teresa Sanchez Rúa]

Dear all,

I am trying to install version 9.1.1 of deal.ii in a Scientific Linux release 7.6, but I am obtaining some input/output errors when compiling and linking the library.

Here, an example of the obtained error:

[ teresa@m2be-amd01 ][ ~/storage/DEALII/dealii-9.1.1/build ]~~> make install

[  0%] Built target expand_instantiations_exe

[  0%] Built target doxygen_headers

[  4%] Built target obj_boost_serialization_debug

[  8%] Built target obj_boost_serialization_release

[  8%] Built target obj_boost_system_debug

[  9%] Built target obj_boost_system_release

[  9%] Built target obj_boost_iostreams_debug

[  9%] Built target obj_boost_iostreams_release

[ 13%] Built target obj_tbb_debug

[ 16%] Built target obj_tbb_release

[ 17%] Built target obj_muparser_debug

[ 17%] Built target obj_muparser_release

[ 17%] Built target obj_sundials_inst

[ 17%] Built target obj_sundials_release

[ 20%] Built target obj_numerics_inst

make[2]: *** INTERNAL: readdir: Input/output error

.  Stop.

make[2]: ../include/deal.II/base/aligned_vector.h: Field 'stem' not cached: aligned_vector.h

make[1]: *** [source/numerics/CMakeFiles/obj_numerics_release.dir/all] Error 2

make: *** [all] Error 2

Do you have any idea of the problem causing the failure in the compilation? Is there any file with more information about the make process?

Thank you in advance.

Best,

      Teresa.

[Wolfgang Bangerth]

On 12/10/19 11:35 PM, Teresa Sanchez Rúa wrote:
> [ 20%] Built target obj_numerics_inst
>
> make[2]: *** INTERNAL: readdir: Input/output error
>
> .Stop.

Disk full? Problems with the file server? What happens if you say "make
install" again? Does the problem persist?

Best
Wolfgang

--
------------------------------------------------------------------------
Wolfgang Bangerth email: bang...@colostate.edu
www: http://www.math.colostate.edu/~bangerth/

[Teresa Sanchez Rúa]

Thank you very much for your help, Wolfgang.

I tried to run again "make install", and the compilation continued without problem but I obtained again a similar error:

[ 32%] Building CXX object source/fe/CMakeFiles/obj_fe_release.dir/fe_face.cc.o

In file included from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/lac/vector.h:24:0,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/lac/vector_memory.h:26,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/lac/lapack_full_matrix.h:27,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/base/array_view.h:27,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/base/mpi.h:21,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/distributed/tria_base.h:22,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/grid/tria_accessor.templates.h:25,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/grid/tria_accessor.h:3698,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/grid/tria.h:4376,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/fe/mapping.h:26,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/fe/fe.h:26,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/fe/fe_poly_face.h:23,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/fe/fe_face.h:24,

                 from /home/teresa/storage/DEALII/dealii-9.1.1/source/fe/fe_face.cc:20:

/home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/base/index_set.h:604:5: warning: unused parameter 'other' [-Wunused-parameter]

     IntervalIterator(const IntervalIterator &other) = default;

     ^

/home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/base/index_set.h: In member function 'dealii::IndexSet::IntervalIterator dealii::IndexSet::IntervalIterator::operator++(int)':

/home/teresa/storage/DEALII/dealii-9.1.1/include/deal.II/base/index_set.h:1156:44: note: synthesized method 'dealii::IndexSet::IntervalIterator::IntervalIterator(const dealii::IndexSet::IntervalIterator&)' first required here 

   const IndexSet::IntervalIterator iter = *this;

                                            ^

/tmp/cc74PARR.s: Assembler messages:

/tmp/cc74PARR.s: Fatal error: can't write 50 bytes to section .text._ZN6dealii13AlignedVectorIdE6resizeEm of CMakeFiles/obj_fe_release.dir/fe_face.cc.o because: 'Input/output error'

make[2]: *** [source/fe/CMakeFiles/obj_fe_release.dir/fe_face.cc.o] Error 1

make[1]: *** [source/fe/CMakeFiles/obj_fe_release.dir/all] Error 2

make: *** [all] Error 2

Maybe we have some problem with the file server, as you have mentioned. 

Best regards,

       Teresa.

[Wolfgang Bangerth]

On 12/12/19 9:14 AM, Teresa Sanchez Rúa wrote:
> /tmp/cc74PARR.s: Fatal error: can't write 50 bytes to section
> .text._ZN6dealii13AlignedVectorIdE6resizeEm of
> CMakeFiles/obj_fe_release.dir/fe_face.cc.o because: 'Input/output error'
> make[2]: *** [source/fe/CMakeFiles/obj_fe_release.dir/fe_face.cc.o] Error 1
> make[1]: *** [source/fe/CMakeFiles/obj_fe_release.dir/all] Error 2
> make: *** [all] Error 2
>
> Maybe we have some problem with the file server, as you have mentioned.

That's how this looks to me.

Best
W.