[2019-06-04T15:18:27.425-0300] [glassfish 4.1] [SEVERE] [] [edu.harvard.hul.ois.jhove] [tid: _ThreadID=47 _ThreadName=jk-connector(1)] [timeMillis: 1559672307425] [levelValue: 1000] [[
[2019-06-04T15:18:29.442-0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.ingest.IngestServiceBean] [tid: _ThreadID=49 _ThreadName=jk-connector(3)] [timeMillis: 1559672309442] [levelValue: 800] [[
[2019-06-04T15:18:29.611-0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.ingest.tabulardata.impl.plugins.xlsx] [tid: _ThreadID=66 _ThreadName=p: thread-pool-1; w: 5] [timeMillis: 1559672309611] [levelValue: 800] [[
[2019-06-04T15:18:29.921-0300] [glassfish 4.1] [WARNING] [] [edu.harvard.iq.dataverse.ingest.tabulardata.impl.plugins.xlsx] [tid: _ThreadID=66 _ThreadName=p: thread-pool-1; w: 5] [timeMillis: 1559672309921] [levelValue: 900] [[
[2019-06-04T15:18:29.922-0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.ingest.tabulardata.impl.plugins.xlsx] [tid: _ThreadID=66 _ThreadName=p: thread-pool-1; w: 5] [timeMillis: 1559672309922] [levelValue: 800] [[
[2019-06-04T15:18:30.147-0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.ingest.IngestServiceBean] [tid: _ThreadID=66 _ThreadName=p: thread-pool-1; w: 5] [timeMillis: 1559672310147] [levelValue: 800] [[
[2019-06-04T15:18:30.147-0300] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.ingest.IngestServiceBean] [tid: _ThreadID=66 _ThreadName=p: thread-pool-1; w: 5] [timeMillis: 1559672310147] [levelValue: 800] [[
and I get the following error in the log file.
[2019-06-04T15:47:46.897-0300] [glassfish 4.1] [SEVERE] [] [] [tid: _ThreadID=50 _ThreadName=Thread-9] [timeMillis: 1559674066897] [levelValue: 1000] [[
org.rosuda.REngine.Rserve.RserveException: voidEval failed, request status: R parser: syntax error
at org.rosuda.REngine.Rserve.RConnection.voidEval(RConnection.java:181)
at edu.harvard.iq.dataverse.rserve.RemoteDataFrameService.runDataPreprocessing(RemoteDataFrameService.java:594)
at edu.harvard.iq.dataverse.dataaccess.DataConverter.runFormatConversion(DataConverter.java:277)
at edu.harvard.iq.dataverse.dataaccess.DataConverter.performFormatConversion(DataConverter.java:112)
at edu.harvard.iq.dataverse.api.DownloadInstanceWriter.writeTo(DownloadInstanceWriter.java:138)
at edu.harvard.iq.dataverse.api.DownloadInstanceWriter.writeTo(DownloadInstanceWriter.java:45)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:263)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:106)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:89)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1154)
at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:621)
at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:377)
at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:367)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:274)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:221)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at edu.harvard.iq.dataverse.api.ApiBlockingFilter.doFilter(ApiBlockingFilter.java:162)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:30)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:873)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:739)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:575)
at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:546)
at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:428)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:378)
at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:34)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
at java.lang.Thread.run(Thread.java:748)]]
[2019-06-04T15:47:46.916-0300] [glassfish 4.1] [WARNING] [] [edu.harvard.iq.dataverse.dataaccess] [tid: _ThreadID=50 _ThreadName=jk-connector(4)] [timeMillis: 1559674066916] [levelValue: 900] [[
Format-converted file was not properly created.]]
Any direction about debugging this issue will be appreciated.