Upgrade to Dataverse 6.7.1: Error 500 when using deleteFiles API on draft dataset

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Alfredo Cosco

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Oct 10, 2025, 11:02:39 AM (4 days ago) Oct 10
to Dataverse Users Community

Hello everyone,

After upgrading a Dataverse instance from version 6.3 to 6.7.1, I found this API: https://guides.dataverse.org/en/6.7.1/api/native-api.html#delete-files-from-a-dataset

I'm trying to use it to delete files from a draft dataset:

curl -H "X-Dataverse-key:XYZ" -X PUT "http://localhost:8080/api/datasets/:persistentId/deleteFiles?persistentId=doi:10.13130/INSTITUTE/R1GVKFF" -H "Content-Type: application/json" -d '{"fileIds": [175,176,177]}' -vvv

However, I'm getting an HTML page with Error 500, where I can read:<div class="alert alert-danger" role="alert" style="margin-top:3em;"><strong>Internal Server Error</strong> - An unexpected error was encountered, no more information is available.</div>

The error stacktrace on the server is:

[2025-10-10T14:46:43.271+0000] [Payara 6.2025.3] [WARNING] [] [org.glassfish.jersey.server.ServerRuntime$Responder] [tid: _ThreadID=74 _ThreadName=http-thread-pool::http-listener-1(2)] [timeMillis: 1760107603271] [levelValue: 900] [[
  An exception mapping did not successfully produce and processed a response. Logging the exception propagated to the default exception mapper.
jakarta.ws.rs.ProcessingException: Resource Java method invocation error.
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:175)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:189)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:176)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:93)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:478)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:400)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:81)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:274)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:266)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:253)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:696)
at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:394)
at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:358)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:312)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:37)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: java.lang.IllegalArgumentException: argument type mismatch
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory.lambda$static$0(ResourceMethodInvocationHandlerFactory.java:52)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:146)
... 61 more
]]

[2025-10-10T14:46:43.272+0000] [Payara 6.2025.3] [WARNING] [] [jakarta.enterprise.web.core] [tid: _ThreadID=74 _ThreadName=http-thread-pool::http-listener-1(2)] [timeMillis: 1760107603272] [levelValue: 900] [[
  Servlet.service() for servlet edu.harvard.iq.dataverse.api.ApiConfiguration threw exception
java.lang.IllegalArgumentException: argument type mismatch
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory.lambda$static$0(ResourceMethodInvocationHandlerFactory.java:52)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:146)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:189)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:176)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:93)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:478)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:400)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:81)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:274)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:266)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:253)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:696)
at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:394)
at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:358)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:312)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:37)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
]]

[2025-10-10T14:46:43.272+0000] [Payara 6.2025.3] [WARNING] [] [jakarta.enterprise.web] [tid: _ThreadID=74 _ThreadName=http-thread-pool::http-listener-1(2)] [timeMillis: 1760107603272] [levelValue: 900] [[
  StandardWrapperValve[default]: Servlet.service() for servlet default threw exception
java.lang.IllegalArgumentException: argument type mismatch
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:569)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory.lambda$static$0(ResourceMethodInvocationHandlerFactory.java:52)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:146)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:189)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:176)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:93)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:478)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:400)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:81)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:274)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:266)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:253)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:696)
at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:394)
at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:358)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:312)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:37)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)

James Myers

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Oct 10, 2025, 11:22:34 AM (4 days ago) Oct 10
to dataverse...@googlegroups.com

I don’t have any quick answer – the exception is coming from the ApiRouter class which is simply trying to map calls to the api like /api/datasets/* to /api/v1/datasets. It should work the same for all API calls. Other than verifying you’re running the recommended Payara release, I’m not sure what to suggest.

 

If you can reproduce it on demo.dataverse.org, let us know.

 

-- Jim

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Alfredo Cosco

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Oct 13, 2025, 4:19:08 AM (yesterday) Oct 13
to Dataverse Users Community

Hello Jim,
I tried on the demo.dataverse.org instance.

With this dataset: https://demo.dataverse.org/dataset.xhtml?persistentId=doi:10.70122/FK2/EPMCJH&version=DRAFT


I run:

curl -H "X-Dataverse-key:MYKEY" -X PUT "https://demo.dataverse.org/api/datasets/:persistentId/deleteFiles?persistentId=doi:10.70122/FK2/EPMCJH" -H "Content-Type: application/json" -d '{"fileIds": [2543483, 2543483]}' -vvv

the response is an html error page:

<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head id="j_idt2">
            <title>500 Internal Server Error - Demo Dataverse</title>

James Myers

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Oct 13, 2025, 4:57:42 PM (20 hours ago) Oct 13
to dataverse...@googlegroups.com

I don’t quite understand the error log, but the problem is that the Guides are incorrect. The parameter being sent should just be a json array of file ids (see the code and test in #11230). So -d [2543483, 2543484] in the example below (note that your entry repeated the same ID twice. Also note that I tested on your doi:10.70122/FK2/EPMCJH and removed the files with those IDs. The files now have ids 2668163 and 2668164 if you want to try on demo again.)

 

Please add an issue so that minimally we get the guides issue cleaned up. My guess w.r.t. the 500 error – the JAX-RS is throwing an IllegalArgumentException that isn’t being caught to return a 400/BadUserRequest error and instead it just gets propagated to become a less clear 500 error. We probably need a Jakarta.ws.rs.ext.ExceptionMapper for this case.

Alfredo Cosco

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3:35 AM (9 hours ago) 3:35 AM
to Dataverse Users Community

Great Jim! The two identical IDs in my example were a typo, but I've now tested the string you suggested and it worked.

Thanks,
Alfredo

Alfredo Cosco

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5:10 AM (8 hours ago) 5:10 AM
to Dataverse Users Community

I don't understand what's happening. On demo.dataverse.org it worked correctly, while I tried on my test installation:

curl -H "X-Dataverse-key:MYKEY" -X PUT "http://localhost:8080/api/datasets/:persistentId/deleteFiles?persistentId=doi:10.13130/RD_UNIMI/R1GVKFF" -H "Content-Type: application/json" -d [175817,175818,175819] -vvv

And I get this message: {"status":"ERROR","message":"When accessing a dataset based on Persistent ID, a persistentId query parameter must be present."}

The persistentId is in the querystring, it's a draft, the only difference is that this test installation doesn't have a working connection with Datacite because it's a test, we don't need to actually publish for now.

Thanks,
Alfredo

PS: the github issue for the documentation samples correction is: https://github.com/IQSS/dataverse/issues/11896

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