Installation issues
Annika
library(BiocManager)
BiocManager::install(c("SNPRelate", "qvalue"))
install_github("green-striped-gecko/dartR")
ERROR: configuration failed for package ‘rgdal’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
Peter Kriesner
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Jose Luis Mijangos
Bernd.Gruber
Hi Annika,
On what kind of system are you running R. I know that linux (and maybe mac) needs gdal installed separately to run rgdal.
So maybe that helps.
PopGenReport is submitted and will be on CRAN in the coming days I hope.
If not possible via cran you can install PopGenReport via
devtools::install_github("green-striped-gecko/PopGenReport")
Cheers, Bernd
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Bernd.Gruber
Hi Annika,
I checked out of interest. Rgdal has been submitted about two weeks ago to cran but it fails to install on macs.
You maybe able to install an older version via
require(devtools)
install_version("rgdal", version = "xyz")
which version works (if at all you have to try
the versions that are available can be found here (under archive):
https://cran.r-project.org/web/packages/rgdal/index.html
or you might try an older mac binary.
Cheers, Bernd
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Dr Bernd Gruber )/_
_.--..---"-,--c_
Professor Ecological Modelling \|..' ._O__)_
Tel: (02) 6206 3804 ,=. _.+ _ \..--( /
Fax: (02) 6201 2328 \\.-''_.-' \ ( \_
Institute for Applied Ecology `''' `\__ /\
Faculty of Science and Technology ')
University of Canberra ACT 2601 AUSTRALIA
Email: bernd....@canberra.edu.au
WWW: bernd-gruber
Australian Government Higher Education Provider Number CRICOS #00212K
NOTICE & DISCLAIMER: This email and any files transmitted with it may contain
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From: da...@googlegroups.com <da...@googlegroups.com>
On Behalf Of Annika
Sent: Friday, 27 May 2022 14:40
To: dartR <da...@googlegroups.com>
Subject: [dartR] Installation issues
Hello,
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Annika
Annika
Error in utils::download.file(url, path, method = method, quiet = quiet, :
download from 'https://api.github.com/repos/green-striped-gecko/dartR/tarball/HEAD' failed