SNPs names get lost when analyzing with other packages, or software

[Farhad Farhadi]

Hi

when I use some packages like pcadapt, or programs such  as BayeScan or Arlequin the name SNP in output file get lost and instead I have the SNP names as 1, 2, 3, 4, ...... etc.

For example if my first SNP name is "46407742-48-C/G" then in output file is "1".

it is especially important fro selecting outlier SNPs. I want to be sure that the order 1, 2, 3, ....., n in ouput file is the order of SNPs in input file (in gl, gi or structure format)

I appreciate if you let me know how can I keep the names. 

Many Thanks

[Arthur Georges]

Hi Farhad,

We can probably look at this on a case by case bases. Can you indicate which dartR script you are using, and provide an example of the desired input file to your external package.

A

[Farhad Farhadi]

Thank you so much

I use gl2bayescan() and gl2 structure()

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