Hello Luis and DartR team!
I have a very basic question here:
What is meant to go in the "plink_path" line of the gl2vcf() function? It says "Path of PLINK binary file [default getwd())]." but I am not sure about the meaning of that. Do I have to already have a PLINK file somewhere or is it a outpath directory? I'm douting since there's already an outpath line in the function...
gl2vcf(
x,
plink_path = getwd(),
outfile = "gl_vcf",
outpath = tempdir(),
snp_pos = "0",
snp_chr = "0",
chr_format = "character",
pos_cM = "0",
ID_dad = "0",
ID_mom = "0",
sex_code = "unknown",
phen_value = "0",
verbose = NULL
)
Thank you very much for your help,
Happy New Year!
Alice