Tide-search "peptide-centric-search" output is missing "xcorr score" values.

[Michael Pique]

When I choose a peptide-centric-search, the "tide-search.target.txt" has a header line that includes "xcorr score" but that field is completely missing from the following lines.  That makes interpreting the columns hard, but more important, it prevents me from screening by xcorr score.  I tried many options like "score-function=both" or "score-function=residue-evidence" that always lead to a dead end of either a "not implemented for peptide-centric-search" or a complaint about exact-p-value requiring a specific mz-bin-width setting, or else a setting to use-neutral-loss-peaks=false, but nothing I did would restore the "xcorr score" column (only its header line).    Suggestions appreciated.  I am running Crux version 4.1-6c8889b7-2022-05-23

- Michael Pique

The Scripps Research Institutei

m...@scripps.edu

[William S Noble]

Thanks for pointing out this bug, Michael.  I have started an issue about it here:

https://github.com/crux-toolkit/crux-toolkit/issues/575

--
You received this message because you are subscribed to the Google Groups "crux-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to crux-users+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/crux-users/967e2e4b-45ba-4ade-b007-e6a3486810e2n%40googlegroups.com.

[William S Noble]

Hi Michael,

This bug has been fixed in the latest release of Crux. Thanks for pointing it out.

Bill