non-periodic water box

55 views
Skip to first unread message

captain mus

unread,
Nov 13, 2022, 5:11:31 PM11/13/22
to cp2k

Dear CP2K Users and Developers

I want to perform a MD of a water molecules in a non periodic box (see input), however I got the error massage "A non-periodic calculation has been requested but the system  exceeds the cell size in at least one of the non-periodic directions!" , I have tried to increase the cell size but it does not give any effect, I also try to using the CENTER COORDINATES on the TOPOLOGY section to keep the water on the box but the result still the same. I am really appreciate for  any advice, Thank you

My best
MuS

wat-nvt.inp

Lucas Lodeiro

unread,
Nov 13, 2022, 7:08:05 PM11/13/22
to cp...@googlegroups.com
Hi Mus,

Your problem is still the cell size... if you check your geometry, there are some water molecules far away, so your minimal and maximal values for X positions are: -33.33 and +35.37 A, for Y -42.09 and +35.00 and for Z -36.89 and +41.72.
So if you want to put all your system into the cell, you need a minimum box of 78.6 A in Z... also you need to add some vacuum space to get all the system into the box without problems.
Check that you are considering a box without periodic boundary conditions.

Regards - Lucas

--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+uns...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cp2k/e9424195-93b8-4f36-adbc-b50d908dab07n%40googlegroups.com.

captain mus

unread,
Nov 13, 2022, 8:14:10 PM11/13/22
to cp...@googlegroups.com
Dear Lucas 

Thank you very much for your response and advice. I will try it. Again thank you

My best regard
MuS

Reply all
Reply to author
Forward
0 new messages