Dear Thomas,
Thanks for your response!
My reasoning for a cutoff much lower than the half box size arises from these two papers:
where it is suggested that the larger cutoff does not implies accuracy and can create "artifacts" in bulk water simulations, particularly if the force field was not parameterized for the larger ranges. I don't have experience in simulating larger bulk water box (such as the one I mentioned before), but does this reasoning makes sense or is there alternative explanation for this? Do you have any particular recommendations in such scenarios? Not specifically for QM/MM, but for FIST calculations as well.
Best Regards,
Mayank Dodia