LiMnO2 isolated cluster

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Victor Volkov

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Jul 6, 2023, 5:18:57 PM7/6/23
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Dear users
I am exploring various Li/Mn/O2 isolated (non-periodic) clusters.
Here is a usual-regular fail for the high spin LiMnO2 case
according the material project LiMnO2_Pmmn_mp-754881.

This is a case of high spin NEL setting.
I report this that you would not need to try.
I am preparing testing antiferromagnetic NEL cases
and magnetization representations as well.

I believe, understanding the ocean of CP2K collapses
to spot the islands of stable solutions
for Li/Mn/O2 (and analogous composites) is important
for humanity to progress.

Do not be too strict on my drive: I live for year on my savings without any support
in the country of no humility.

I hope to stimulate students and researchers to post such questions
to be berserk and help CP2K excellence.

Victor  



 
LiMnO2.inp
LiMnO2.out
LiMnO2_Pmmn_mp-754881.xyz

Krack Matthias

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Jul 7, 2023, 7:37:06 AM7/7/23
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Dear Victor

 

Converging such a small isolated cluster with a lot of unsaturated oxygen atoms (i.e. dangling bonds) at the surface will be very difficult. And even if you can converge it, the structure will most likely undergo strong deformations during a structure relaxation.

 

Best

 

Matthias

 

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Victor Volkov

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Jul 7, 2023, 8:11:20 AM7/7/23
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Dear Matthias,
thank you for the kind reply
an for the explanations.

I was thinking about the dangling bonds and about the nature of Manganese ions.
Here is my current adaptation for LiMn3O4 material project mp-34650:
where
1) there are no dangling bonds
2) all Mn2+ and Mn3+ are patterned to  sum-up a singlet.
3) DFT+U is introduced.

In respect to smallness and deformations.

Well, actually, in bio-inorganic systems, often (if not almost always), experiments concern
properties of finite systems.
A polypeptide associating with a surface of a certain facet "never happens",
though the PBC formalism is mesmerizingly inviting, indeed.

This is why, I believe addressing structure and electronics of such small clusters,
as I try to manipulate with, are more likely to attract attention in the near future
as "realistic" imaginative representations to model electromagnetism upon
organic binding.

Also, I think, computing optical properties when stepping away from the systems under PBC
might be more feasible and realistic.
 
Thank you.
With best regards,
Victor

LiMn3O4.inp
LiMn3O4.out
LiMn3O4_mp-34650_computed.cif
LiMn3O4_mp-34650_computed.cif
Li4Mn12O16_adoptation.xyz

Krack Matthias

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Jul 7, 2023, 9:35:23 AM7/7/23
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Dear Victor

 

I doubt that you will get rid of all dangling bonds, because the actual oxidation and/or spin states of the atoms come from your “wish list” in order meet your (chemical) expectations based on the imposed stoichiometry. Anyway, you should adjust a few things in your input just to have any hope of success,  i.e. convergence:

  • Use “analytic” or “MT” as PSOLVER
  • Use “LSD”
  • Try a larger smearing temperature, e.g. 1000-2000 K, that value is not related to the ambient temperature
  • Use a smaller mixing ALPHA, e.g. 0.1 instead of 0.4.

 

HTH

 

Matthias

 

Victor Volkov

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Jul 7, 2023, 9:56:11 AM7/7/23
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Dear Matthias,
thank you for the advises.
I appreciate.

> I doubt that you will get rid of all dangling bonds,

Indeed, this a nice challenge together with:
a) searching material projects to try shaping relevant structures;
b) managing right stoichiometry;
c) managing proper bonding network according to valencies.

The Li4Mn12O16_adoptation.xyz
is one of current trials.
  
With best regards,
Victor



Victor Volkov

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Jul 8, 2023, 5:14:31 PM7/8/23
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Dear Matthias:
good evening.

The example I try to deal with makes it apparent
that the CP2K fundamental trump-card (at present) is the OT protocol for SCF.
May be, if any possible improvement - this would concern "only" the SCF.

(This reminds me the scf=xqc magic in "the alternative reality".)

So, giving a job for SCF developer might be the key for the future.
:-)
Please, forgive me: I wish the CP2K team would forgive me.
You are great !

However, I attach comparative sets of files for the LiMn3O4 case.
The performance is strikingly different.
Or, a proper match or "two miss-conceptions" happened to compensate each other
to yield a "suitability".

If you find a moment, a curiosity and a pit of energy to comment or criticize, I would appreciate, much.
If one of those is damaged - please, forgive and disregard.

Nice weekend.
With best,
Victor

PS:
After two days, I am still "hurt" by your perspective on the dangling bonds optimization.
:-)
Well, I think, any metal-organic system consists nothing but a stet of dangling bonds, usually.
My data base accounts about 1000 systems: normal modes, mulliken, esp, 
natural transition orbitals - all done proper.
All of them are just dangling bonds about a metal,
save the "core" metallocenes, roussin's salts and some  "core" cubanes.
Of course, trying to step from a solid state to a metal-organic is a puzzle.
Such chemistry blows my mind, in fact.
Victor
 

 

 

LiMn3O4_OT.out
LiMn3O4_OT.inp
LiMn3O4.inp
LiMn3O4.out
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