Thank you
Hi,
All dumped xyz files are in standard XMOL format and so are directly viewable in VMD. You need to load the foo-pos-1.xyz file to view the trajectory, not your output/log file.
-T
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Hi,I don't have any issues either. Vasantha, I'm not familiar with the way you're loading the XYZ file. The output from VMD suggests you're reading it from a plugin, try loading the XYZ first.
Info) Dynamically loaded 75 plugins in directory:Info) C:/Program Files (x86)/University of Illinois/VMD/plugins/WIN32/molfileInfo) File loading in progress, please wait.Info) Using plugin xyz for structure file C:\Users\koschey\Downloads\H2O-pos-1.xyzInfo) Using plugin xyz for coordinates from file C:\Users\koschey\Downloads\H2O-pos-1.xyzInfo) Determining bond structure from distance search ...Info) Finished with coordinate file C:\Users\koschey\Downloads\H2O-pos-1.xyz.Info) Analyzing structure ...Info) Atoms: 3Info) Bonds: 2Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0Info) Residues: 1Info) Waters: 0Info) Segments: 1Info) Fragments: 1 Protein: 0 Nucleic: 0vmd >-T
On Saturday, October 5, 2019 at 10:19:57 AM UTC-4, Nikhil Maroli wrote:
Problem is with your VMD, the xyz file is working fine
On Sat, Oct 5, 2019 at 6:35 PM vasanth kumar <vasan...@gmail.com> wrote:
Hi TravisThank you for reply.When I opened .xyz file, No molecule is seen. Pl check attached file and attaching .xyz file also
On Sat, 5 Oct 2019 at 18:22, Travis <polla...@gmail.com> wrote:
Hi,
All dumped xyz files are in standard XMOL format and so are directly viewable in VMD. You need to load the foo-pos-1.xyz file to view the trajectory, not your output/log file.
-T
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----With RegardsDr. V. Vasantha KumarAssoc. Prof. of PhysicsVignan Institute of Technology and ScienceHyderabad.Mob:9959363113
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--Regards,Nikhil Maroli
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