Compilation problems: mpiifort not found, even though is perfectly installed

[Diego Guedes-Sobrinho]

Hi everyone, I'm trying a compilation with intel compilers with the following archtecture:

------------------------------

CC        = mpiicc

FC        = mpiifort

LD        = mpiifort

AR        = ar -r

CFLAGS    = -O3 -xAVX -g -traceback -xHost

DFLAGS    = -D__FFTW3 -D__MKL -D__MPI_VERSION=3

DFLAGS   += -D__parallel -D__SCALAPACK

FCFLAGS   = $(CFLAGS) $(DFLAGS)

FCFLAGS  += -fpp -fp-model precise -free -funroll-loops

FCFLAGS  += -I${MKLROOT}/include -I${MKLROOT}/include/fftw

LDFLAGS   = $(FCFLAGS) -static-intel -static_mpi

LDFLAGS_C = -nofor_main

MKL_LIB   = ${MKLROOT}/lib/intel64

LIBS      = $(MKL_LIB)/libmkl_scalapack_lp64.a

LIBS     += -Wl,--start-group

LIBS     += $(MKL_LIB)/libmkl_intel_lp64.a

LIBS     += ${MKL_LIB}/libmkl_sequential.a

LIBS     += $(MKL_LIB)/libmkl_core.a

LIBS     += ${MKL_LIB}/libmkl_blacs_intelmpi_lp64.a

LIBS     += -Wl,--end-group

# Required due to memory leak that occurs if high optimisations are used

mp2_optimize_ri_basis.o: mp2_optimize_ri_basis.F

        $(FC) -c $(subst O2,O0,$(FCFLAGS)) $<

----------------------

After following command 

make -j 6 ARCH=Linux-x86-64-intel-minimal_changed VERSION=popt

I got the following error message:

/bin/sh: 1: mpiifort: not found

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/exts/dbcsr/Makefile:428: recipe for target 'dbcsr_kinds.o' failed

make[4]: *** [dbcsr_kinds.o] Error 127

Makefile:129: recipe for target 'libdbcsr' failed

make[3]: *** [libdbcsr] Error 2

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/exts/Makefile.inc:16: recipe for target 'dbcsr' failed

make[2]: *** [dbcsr] Error 2

make[2]: ** Esperando que outros processos terminem.

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/Makefile:123: recipe for target 'popt' failed

make[1]: *** [popt] Error 2

Makefile:118: recipe for target 'all' failed

make: *** [all] Error 2

mpiifort is installed, such as others codes can be compiled with the intel set.

By setting explicity the path for mpiifort and mpiicc, e. g.

CC        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiicc

FC        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort

LD        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort

the compilation error change to 

/opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort: 1: eval: ifort: not found

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/exts/dbcsr/Makefile:428: recipe for target 'dbcsr_kinds.o' failed

make[4]: *** [dbcsr_kinds.o] Error 127

Makefile:129: recipe for target 'libdbcsr' failed

make[3]: *** [libdbcsr] Error 2

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/exts/Makefile.inc:16: recipe for target 'dbcsr' failed

make[2]: *** [dbcsr] Error 2

make[2]: ** Esperando que outros processos terminem.

/home/dgs/Downloads/cp2k-7.1/cp2k-7.1_parallel/cp2k-7.1/Makefile:123: recipe for target 'popt' failed

make[1]: *** [popt] Error 2

Makefile:118: recipe for target 'all' failed

make: *** [all] Error 2

Anyone would know how to solve this?

Thanks in advance.

[Glenn Wolosh]

You need to source the intel compilers prior to compiling:

source /opt/intel/compilers_and_libraries_2020.4.304/linux/compilervars.sh intel64

--Glenn

[Glenn Wolosh]

Oops, that should be 

source /opt/intel/compilers_and_libraries_2020.4.304/linux/bin/compilervars.sh intel64

--Glenn

[Diego Guedes-Sobrinho]

Glenn

That's not the case.

The compilers are charged, even into ~/.bashed.rc

As I said, compiling others codes with intel works perfectly.

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[Krack Matthias (PSI)]

Hello

 

What do you get when you type “which mpiifort”?

 

The need to specify the full path for the compiler call indicates that your environment is not properly setup.

 

HTH

 

Matthias

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[Diego Guedes-Sobrinho]

Mathias, 

the full path was indicated at a second moment, as a said, like this

CC        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiicc

FC        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort

LD        = /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort

which is the result of "which mpiifort". However, the error change to ifort not found, something like:

/opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiifort: 1: eval: ifort: not found

One new insight: that solved the problem: I'm using "sudo make", which does not recognize the intel compilers. 

How to solve? Removing sudo and performing not as root.

However, the problem moves to obj/ directory that requires root privileges to access if at the first time you tried to compiled with sudo. 

We have a paradox.

Solving the problem:

You have to change root privileges to all directories. Just type "sudo chown user:user directoty"

Thank you Matthias and Glenn, talking with you guys made me think about and I could solve the problem.

[Evelyn Navarro]

.