how to treat water atoms (Wat) in cif files of minerals

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DMITRII Drugov

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27 abr 2023, 22:37:3127/4/23
a cp2k
Dear CP2K community, 

I am trying to simulate the mineral/water interface and there are some Wat clusters files in the crystal of the mineral (inside the solid). I wonder how should I treat them in CP2K?
Should I manually create H2O molecules in Avogardo to substitute all Wat atoms or there is a better way to process to simulation?

Here I attached a screenshot from the Vesta and cif file for the slab.

I would really appreciate your expert opinion on this matter.

Best regards,
Dmitrii

Screenshot 2023-04-28 at 12.30.26 pm.png



sepiolite_110.cif

ABDELILAH AYAD

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8 may 2023, 11:11:118/5/23
a cp...@googlegroups.com
BONJOUR
EST CE QUE TU AS TROUVER DES RESULTAS 

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DMITRII Drugov

no leída,
9 may 2023, 0:37:159/5/23
a cp2k
Not yet. I just manually added hydrogens to these W atoms and still work on the geometry optimisation.
I am not sure whether it will work.
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