DFT(M062X)-MD energy conservation problem

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Бранислав Миловановић

непрочетено,
15.06.2022 г., 14:19:1915.06.22 г.
до cp2k
Dear cp2k users/developers,

I want to perform NVT dynamics of the compound from the picture in the attachment.

However, when I try to run M062X DFT-MD calculation under present setup (input files in the attachment) I get a constant shift of the Cons Qty during my run for NVT runs (graph from my last attempt is in the attachment - last 2ps).

I've tested the DFT (M062X) part of the input file with the different geometry optimization protocols to match Gaussian09 results. I found excelent aggrement between the geometries so I think that M062X setup should not be a problem.
Could CSVR thermostat be a problem? Or something else in the MD section?

Also, I used this kind of input file earlier and encountered no problems.
Now I'm using cp2k 9.1 version.

Can anybody help me with this?

Best,
Branislav
molecule.PNG
coord.xyz
input
Cons Qty.PNG

Matt Watkins

непрочетено,
15.06.2022 г., 15:55:3915.06.22 г.
до cp2k
Not sure.
If it was me, I'd run NVE and see if that conserves energy. If that does then you can focus on the thermostat.

Krack Matthias (PSI)

непрочетено,
16.06.2022 г., 1:14:5416.06.22 г.
до cp...@googlegroups.com

Hi Branislav

 

You are setting ANGVEL_TOL and COMVEL_TOL explicitly to zero and you &CENTER_COORDINATES in each MD step. All these options impact the energy conservation. Try to remove/comment all these options for an unbiased NVT MD run.

 

Matthias

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Sam Broderick

непрочетено,
16.06.2022 г., 3:52:5316.06.22 г.
до cp2k
Hi Everyone

Is there a library out there to extract this kind of information out of cp2k output? Or does everyone have to roll their own regex?

Thanks
Sam

Jürg Hutter

непрочетено,
16.06.2022 г., 4:50:3016.06.22 г.
до cp...@googlegroups.com
Hi

some additional changes to consider:

Cutoff: GAPW can be used with smaller cutoff, but you still should increase REL_CUTOFF

XC_GRID: Again GAPW is easier to handle and you don't need the smoothing

Both of these changes should make the calculation more stable.

regards

Juerg Hutter

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From: cp...@googlegroups.com <cp...@googlegroups.com> on behalf of Бранислав Миловановић <dr.bra...@gmail.com>
Sent: Wednesday, June 15, 2022 8:19 PM
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Subject: [CP2K:17176] DFT(M062X)-MD energy conservation problem

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Бранислав Миловановић

непрочетено,
16.06.2022 г., 19:52:1616.06.22 г.
до cp2k
Dear all,

Thanks for the advices.

As Matthias suggested removing:
#    COMVEL_TOL 0
 #   ANGVEL_TOL 0  

did the trick and no there is no Cons Qty shift anymore.

I will try what Juerg suggested considering cutoff and xc_grid as well.

Thanks once again!

Kind regards,
Branislav

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