Hi All,
I am trying to build a simple model to understand cell to cell communication.
To start with, I want to model the diffusion of a drug molecule from one cell to an adjacent cell. If there are examples of such a system that is already set up and simulated in COPASI, could someone please share a reference link?
Thanks,
Deepa
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-- Pedro Mendes, PhD Professor and Director, Richard D. Berlin Center for Cell Analysis and Modeling University of Connecticut School of Medicine group website: http://www.comp-sys-bio.org
Hi Deepa,
You can try Virtual Cell software (https://vcell.org) where you can define arbitrary cell geometry and model diffusion. There are multiple tutorials (e.g. the first one at https://vcell.org/support) where
you can see how compartments and diffusion are modeled. Questions to vcell-...@googlegroups.com
Best,
Michael
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