dFBA construction in COBRApy

89 views
Skip to first unread message

Jeremy Rodrigo Guerrero Alejos

unread,
Mar 30, 2022, 10:30:08 AM3/30/22
to cobra pie
Hello everyone,
I am working on a dFBA of the Yarrowia lipolytica. I am currently using the iYali model v4.1.2 and the COBRApy toolbox. 
My problem is that I have not been able to understand  how to use the code for the dFBA on COBRApy. 
I have been using the code that appears on the documentation but it is not well explained
Does somebody knows an step by step tutorial on how to set up the Dynamic System for the dFBA?

Thank you for all the help.
Jeremy Guerrero.

Moritz Beber

unread,
Mar 30, 2022, 10:43:22 AM3/30/22
to cobr...@googlegroups.com
You could try out which was made exactly for that purpose https://dynamic-fba.readthedocs.io/ and has a couple of examples.

La información contenida en este e-mail y sus anexos es confidencial, privilegiada y está dirigida exclusivamente a su destinatario, en consecuencia, solo puede ser utilizada por aquel. Si usted no es el destinatario original, no deberá examinar, usar, copiar o distribuir este mensaje o la información que contiene. Si lo recibe por error, por favor reenvíelo a la persona que se lo envió y elimínelo. Cualquier retención o uso total o parcial no autorizada de este mensaje está estrictamente prohibida y sancionada por ley.

--
You received this message because you are subscribed to the Google Groups "cobra pie" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cobra-pie+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cobra-pie/bae1b4fc-953d-4366-b04b-d55c454670c2n%40googlegroups.com.

gaurav subedi

unread,
Mar 30, 2022, 11:59:05 AM3/30/22
to Moritz Beber, cobr...@googlegroups.com
I need to do the same..can anyone post a tutorial for the same dfba?? 

Sent from my iPhone

On Mar 30, 2022, at 7:43 AM, Moritz Beber <moritz...@gmail.com> wrote:


Reply all
Reply to author
Forward
0 new messages