Is the visualizing tool down?

[Diego Leal]

Hello,

I have been using the Circos table viewer (http://mkweb.bcgsc.ca/tableviewer/visualize/) for some years now with lots of success. Today I was going to do a minor change (just change one label) to a Circos plot I successfully created with the table viewer some weeks ago but the application does not seem to produce any result. Specifically, after I upload the corresponding .txt file (see attached) literally nothing happens (i.e., no Circos plot is produced) and I do not get any error message. I'm wondering if the application temporarily down or something like that. Any help is much appreciated!

[Sai Xu]

Exactly. I came across the same problem.

在 2019年7月27日星期六 UTC+8上午4:28:23，Diego Leal写道：

[Martin Krzywinski]

Things are fine now from my end.

I think there may have been some transient connectivity issues within our network.

Apologies for the outage,

m

Martin Krzywinski

science + art

http://mkweb.bcgsc.ca

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[Sai Xu]

Dear Martin,

I tried again, but still failed. No figure was generated when I upload data and then click the "Visualize table" button as usual. I attach the screenshot. Any help is much appreciated.

Thanks

Sai

在 2019年8月19日星期一 UTC+8上午10:57:47，Martin写道：

Things are fine now from my end.

I think there may have been some transient connectivity issues within our network.

Apologies for the outage,

m

Martin Krzywinski

science + art

http://mkweb.bcgsc.ca

On Sun, Aug 18, 2019 at 7:56 PM Sai Xu <rainb...@gmail.com> wrote:

Exactly. I came across the same problem.

在 2019年7月27日星期六 UTC+8上午4:28:23，Diego Leal写道：

Hello,

I have been using the Circos table viewer (http://mkweb.bcgsc.ca/tableviewer/visualize/) for some years now with lots of success. Today I was going to do a minor change (just change one label) to a Circos plot I successfully created with the table viewer some weeks ago but the application does not seem to produce any result. Specifically, after I upload the corresponding .txt file (see attached) literally nothing happens (i.e., no Circos plot is produced) and I do not get any error message. I'm wondering if the application temporarily down or something like that. Any help is much appreciated!

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[Lee Joanna]

I had the same problem today. The online version wasn't working. I don't know why...so sad...

在 2019年8月19日星期一 UTC+8上午10:57:47，Martin写道：

Things are fine now from my end.

I think there may have been some transient connectivity issues within our network.

Apologies for the outage,

m

Martin Krzywinski

science + art

http://mkweb.bcgsc.ca

On Sun, Aug 18, 2019 at 7:56 PM Sai Xu <rainb...@gmail.com> wrote:

Exactly. I came across the same problem.

在 2019年7月27日星期六 UTC+8上午4:28:23，Diego Leal写道：

Hello,

I have been using the Circos table viewer (http://mkweb.bcgsc.ca/tableviewer/visualize/) for some years now with lots of success. Today I was going to do a minor change (just change one label) to a Circos plot I successfully created with the table viewer some weeks ago but the application does not seem to produce any result. Specifically, after I upload the corresponding .txt file (see attached) literally nothing happens (i.e., no Circos plot is produced) and I do not get any error message. I'm wondering if the application temporarily down or something like that. Any help is much appreciated!

--
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[Daniel O'Brien]

I too have used the online circos tool many times over the past few months and today I am experiencing the same problems as stated by Lee, Sai, and Diego. Are the developers aware that there is a problem? If so when can we expect a fix?

[Martin]

Sorry guys. I looked into it more and found the problem -- the server ran out of log space.

Fixed now.

m

[Denis Tr]

Dear Martin,

I seem to not be able to access circos.ca site at all. It gives the following message:

Forbidden

You don't have permission to access /tableviewer/visualize/ on this server.

---

Apache/2.2.3 (CentOS) Server at mkweb.bcgsc.ca Port 80

Is this a known issue? 

[Rondon Neto]

Hey Martin! Thank you for this tool! 

    I came across the same problem. I got this error:

System error

error: 
mkdir /home/martink/www/htdocs/tableviewer/tmp/kbmvefv: Disk quota exceeded at /home/martink/www/mason/comp/tableviewer/write-uploaded-file line 17.

context: 

... 

96: 
local @CARP_NOT = $cgc ? $cgc->() : caller();
97: 
shortmess_heavy(@_);
98: 
}
99: 

100: 
sub croak { die shortmess @_ }
101: 
sub confess { die longmess @_ }
102: 
sub carp { warn shortmess @_ }
103: 
sub cluck { warn longmess @_ }
104: 

... 

code stack: 
/usr/lib/perl5/5.8.8/Carp.pm:100
/usr/lib/perl5/5.8.8/File/Path.pm:239
/usr/lib/perl5/5.8.8/File/Path.pm:194
/usr/lib/perl5/5.8.8/File/Path.pm:173
/home/martink/www/mason/comp/tableviewer/write-uploaded-file:17
/home/martink/www/htdocs/tableviewer/index.mhtml:78
/usr/lib/perl5/site_perl/5.8.8/HTML/Mason/Request.pm:948
/etc/httpd/mason/mkweb/obj/1120391307/public/tableviewer/index.mhtml.obj:32
/home/martink/www/htdocs/tableviewer/autohandler:11
/home/martink/www/mason/comp/tableviewer/autohandler.site:71
raw error

    I'm wondering if the application temporarily down or something like that. Any help is much appreciated!

My best regards, 

Rondon Neto

[Martin]

Fixed. Sorry about this.

[rond...@gmail.com]

Thank you very much!! Don't need to be sorry!

my best regards,

Rondon

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[Vincent Appiah]

Hello Martin,

I tried using the online tool and  it seems to be down. I keep getting connection timeout whenever I submit my file. Please advice. Thanks