DICOM Batch import

[Kundan Singh Chufal]

I am having data of 400 patients and DICOM data for one patient is structured as

MainDir containing one subdirectory

This subdirectory contains 4 directories and details of these 4 directories are as follows

one directory contains -- CT data (having multiple .dcm file)

one directory contains -- RTDose(having one .dcm file)

one directory contains -- RTPLAN(having one .dcm file)

one directory contains -- RTSTRUCTURE(having one .dcm file)

when i am trying to import individual patient then it is being done perfectly although there are some issues with dose import.

Problem is when I am trying to batch import using batchConvert.m

--------------------------------------------------------------------------------------------------------------

it does everything but at the end of every patient transfer this message comes 

Creating raster-scan representation of lung_cntr contour.

Creating raster-scan representation of lung_ipsi contour.

Creating raster-scan representation of lung_total contour.

Creating raster-scan representation of ptv contour.

Creating raster-scan representation of rhilargtv contour.

Creating raster-scan representation of r. level 4 contour.

Creating raster-scan representation of rll gtv contour.

Creating raster-scan representation of rll ptv contour.

Creating raster-scan representation of rt hilar ptv contour.

Creating raster-scan representation of skin contour.

Creating raster-scan representation of spinal_cord contour.

CERR>>  Using zValues to compute voxel thicknesses.

NOT CONVERTED E:\test_NSCLC-Cetuximab\1.3.6.1.4.1.14519.5.2.1.6329.6468.180596963996965825122162035932 ...

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and there is no output files.

For each patient I have created a single folder with all the DICOM files (Str, dose, plan, and CT) as mentioned in documentation but still same thing is happening.







[ap...@mskcc.org]

Dear Kundan,

 

batchConvert.m had an unnecessary line of code which looked for directory names two levels up. Hence, it failed with E:\myDcmDir whereas worked with E:\parentDir\myDcmDir. I took this line out and pushed the change to github. Can you please pull the latest update and try out.

 

Thanks,

Aditya

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