information on the order that patients joined MSKCC-IMPACT or TCGA?

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Dave Lahr

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Mar 5, 2020, 7:32:10 PM3/5/20
to cBioPortal for Cancer Genomics Discussion Group
Hello

Is there any metadata available for download from cBioPortal (or elsewhere) that contains the order / timing that patients joined the MSKCC-IMPACT or TCGA studies?

Thank you,
Dave

Tali Mazor

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Mar 6, 2020, 10:10:33 AM3/6/20
to Dave Lahr, cBioPortal for Cancer Genomics Discussion Group
Hi Dave,

There is unfortunately no data on timing of patients in these cohorts. Such data is generally restricted due to patient privacy concerns. For MSK-IMPACT, you can infer the order of sequencing based on the patient ID numbers, which increase over time. I'm not aware of any such information for TCGA cohorts.

-Tali


On Thu, Mar 5, 2020 at 7:32 PM Dave Lahr <dll...@gmail.com> wrote:

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Dave Lahr

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Mar 6, 2020, 10:18:39 AM3/6/20
to Tali Mazor, Dave Lahr, cBioPortal for Cancer Genomics Discussion Group

Thank you!  Much appreciated, completely understand.

 

From: Tali Mazor <tma...@ds.dfci.harvard.edu>
Date: Friday, March 6, 2020 at 10:10 AM
To: Dave Lahr <dll...@gmail.com>
Cc: cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: Re: [cbioportal] information on the order that patients joined MSKCC-IMPACT or TCGA?

 

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