OncoPrinter Question

[Hakim, Sydney]

Hi,

I am trying to use OncoPrinter to map gene Copy Number Alterations. Most of my samples are "Neutral," meaning that they do not have a copy number alteration. How can I input this into my data? When I click submit, "no alterations" appears in the legend, but I can't find any way to put this in my data input. Thanks!

Sydney Hakim | Research Services Entry Professional | Hayashi Laboratory | LinkedIn

Dpt. of Pediatrics: Hematology, Oncology, & Bone Marrow Transplantation 

12800 E 19th Ave, RC1N | Room P18-4402K | Aurora, CO 80045

[JJ Gao]

Hi Sydney,

In order to add the samples without alteration, you can add the sample IDs at the end of the input - see attached example file.

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[Hakim, Sydney]

Thank you! That is very helpful!!

Sydney Hakim | Research Services Entry Professional | Hayashi Laboratory | LinkedIn

Dpt. of Pediatrics: Hematology, Oncology, & Bone Marrow Transplantation 

12800 E 19th Ave, RC1N | Room P18-4402K | Aurora, CO 80045

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From: JJ Gao <jianji...@gmail.com>
Sent: Wednesday, August 20, 2025 8:56 PM
To: Hakim, Sydney <SYDNEY...@cuanschutz.edu>
Cc: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Re: [cbioportal] OncoPrinter Question

 

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