Error on CBioPortal

15 views
Skip to first unread message

Sachi Bhalchandra Tengse

unread,
Jul 8, 2025, 4:49:34 PM7/8/25
to cbiop...@googlegroups.com
Hello,

I received this error while using CBioPortal. I clicked on Cell Lines --> Cancer Cell Line Encyclopedia (Broad, 2019) --> Explore selected studies. 

"{\"req\":{\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/treatments/display-patient\",\"data\":\"[\\\"gbm_mayo_pdx_sarkaria_2019\\\",\\\"gbm_cptac_2021\\\",\\\"gbm_columbia_2019\\\",\\\"gbm_tcga_pub\\\",\\\"gbm_tcga_pub2013\\\",\\\"gbm_tcga\\\",\\\"gbm_tcga_pan_can_atlas_2018\\\",\\\"gbm_tcga_gdc\\\",\\\"mnet_tcga_gdc\\\"]\",\"headers\":{\"accept\":\"application/json\",\"content-type\":\"application/json\"}},\"xhr\":{\"_url\":\"//www.cbioportal.org/api/treatments/display-patient\"},\"text\":\"{\\\"timestamp\\\":1752001858953,\\\"status\\\":500,\\\"error\\\":\\\"Internal Server Error\\\",\\\"path\\\":\\\"/api/treatments/display-patient\\\"}\",\"statusText\":\"\",\"statusCode\":500,\"status\":500,\"statusType\":5,\"info\":false,\"ok\":false,\"redirect\":false,\"clientError\":false,\"serverError\":true,\"error\":{\"status\":500,\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/treatments/display-patient\"},\"created\":false,\"accepted\":false,\"noContent\":false,\"badRequest\":false,\"unauthorized\":false,\"notAcceptable\":false,\"forbidden\":false,\"notFound\":false,\"unprocessableEntity\":false,\"headers\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"header\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"type\":\"application/json\",\"links\":{},\"body\":{\"timestamp\":1752001858953,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/treatments/display-patient\"}}\n\n\n{\"req\":{\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/treatments/display-sample\",\"data\":\"[\\\"gbm_mayo_pdx_sarkaria_2019\\\",\\\"gbm_cptac_2021\\\",\\\"gbm_columbia_2019\\\",\\\"gbm_tcga_pub\\\",\\\"gbm_tcga_pub2013\\\",\\\"gbm_tcga\\\",\\\"gbm_tcga_pan_can_atlas_2018\\\",\\\"gbm_tcga_gdc\\\",\\\"mnet_tcga_gdc\\\"]\",\"headers\":{\"accept\":\"application/json\",\"content-type\":\"application/json\"}},\"xhr\":{\"_url\":\"//www.cbioportal.org/api/treatments/display-sample\"},\"text\":\"{\\\"timestamp\\\":1752001858955,\\\"status\\\":500,\\\"error\\\":\\\"Internal Server Error\\\",\\\"path\\\":\\\"/api/treatments/display-sample\\\"}\",\"statusText\":\"\",\"statusCode\":500,\"status\":500,\"statusType\":5,\"info\":false,\"ok\":false,\"redirect\":false,\"clientError\":false,\"serverError\":true,\"error\":{\"status\":500,\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/treatments/display-sample\"},\"created\":false,\"accepted\":false,\"noContent\":false,\"badRequest\":false,\"unauthorized\":false,\"notAcceptable\":false,\"forbidden\":false,\"notFound\":false,\"unprocessableEntity\":false,\"headers\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"header\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"type\":\"application/json\",\"links\":{},\"body\":{\"timestamp\":1752001858955,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/treatments/display-sample\"}}\n\n\n{\"req\":{\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/clinical-event-type-counts/fetch\",\"data\":\"{\\\"studyIds\\\":[\\\"gbm_mayo_pdx_sarkaria_2019\\\",\\\"gbm_cptac_2021\\\",\\\"gbm_columbia_2019\\\",\\\"gbm_tcga_pub\\\",\\\"gbm_tcga_pub2013\\\",\\\"gbm_tcga\\\",\\\"gbm_tcga_pan_can_atlas_2018\\\",\\\"gbm_tcga_gdc\\\",\\\"mnet_tcga_gdc\\\"]}\",\"headers\":{\"accept\":\"application/json\",\"content-type\":\"application/json\"}},\"xhr\":{\"_url\":\"//www.cbioportal.org/api/clinical-event-type-counts/fetch\"},\"text\":\"{\\\"timestamp\\\":1752001858955,\\\"status\\\":500,\\\"error\\\":\\\"Internal Server Error\\\",\\\"path\\\":\\\"/api/clinical-event-type-counts/fetch\\\"}\",\"statusText\":\"\",\"statusCode\":500,\"status\":500,\"statusType\":5,\"info\":false,\"ok\":false,\"redirect\":false,\"clientError\":false,\"serverError\":true,\"error\":{\"status\":500,\"method\":\"POST\",\"url\":\"//www.cbioportal.org/api/clinical-event-type-counts/fetch\"},\"created\":false,\"accepted\":false,\"noContent\":false,\"badRequest\":false,\"unauthorized\":false,\"notAcceptable\":false,\"forbidden\":false,\"notFound\":false,\"unprocessableEntity\":false,\"headers\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"header\":{\"cache-control\":\"no-cache, no-store, max-age=0, must-revalidate\",\"content-encoding\":\"gzip\",\"content-type\":\"application/json\",\"date\":\"Tue, 08 Jul 2025 19:10:58 GMT\",\"elapsed-time\":\"0\",\"expires\":\"0\",\"pragma\":\"no-cache\",\"strict-transport-security\":\"max-age=31536000; includeSubDomains\",\"vary\":\"origin,access-control-request-method,access-control-request-headers,accept-encoding\",\"x-content-type-options\":\"nosniff\",\"x-frame-options\":\"DENY\",\"x-xss-protection\":\"0\"},\"type\":\"application/json\",\"links\":{},\"body\":{\"timestamp\":1752001858955,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/clinical-event-type-counts/fetch\"}}"

Please let me know how I can access the datasets.

Best,
Sachi

Tali Mazor

unread,
Jul 8, 2025, 4:56:31 PM7/8/25
to Sachi Bhalchandra Tengse, cbiop...@googlegroups.com
Hi Sachi,

Thanks for reaching out. Can you please try again? We were having some issues with the site earlier today, but it's working now, and I am able to access the CCLE Broad 2019 study.

-Tali



--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/cbioportal/CAMccfGxL%3Dbb267355xd%2B7T1kd5gJju9LffrXe8zD-3OEDrS4Ag%40mail.gmail.com.

Sachi Bhalchandra Tengse

unread,
Jul 9, 2025, 10:01:44 AM7/9/25
to Tali Mazor, cbiop...@googlegroups.com
Hi Tali,

Thanks for the response! I can access the dataset now. Thank you so much for your help!

Best,
Sachi
Reply all
Reply to author
Forward
0 new messages