Error: Fatal Exception

93 views
Skip to first unread message

Leonardo Matheus Servino

unread,
Jun 16, 2020, 7:18:45 PM6/16/20
to beast-users
Hello,

please, I got this error:

Fatal exception: Could not find a proper state to initialise. Perhaps try another seed.
See http://www.beast2.org/2018/07/04/fatal-errors.html for other possible solutions.
java.lang.RuntimeException: Could not find a proper state to initialise. Perhaps try another seed.
See http://www.beast2.org/2018/07/04/fatal-errors.html for other possible solutions.

Can anyone help me to solve this problem?

The xml is attached

StarBeast_Phyllo_novo3-limpo.xml

Remco Bouckaert

unread,
Jun 16, 2020, 7:27:57 PM6/16/20
to beast...@googlegroups.com
Hi Leonardo,

Removing the random tree initialisers from the XML (the fragment below) seems to fix the problem.

Cheers,

Remco



    <init id="RandomTree.t:MitochondrialTree" spec="beast.evolution.tree.RandomTree" estimate="false" initial="@Tree.t:MitochondrialTree" taxa="@Subset1">
        <populationModel id="ConstantPopulation0.t:MitochondrialTree" spec="ConstantPopulation">
            <parameter id="randomPopSize.t:MitochondrialTree" spec="parameter.RealParameter" name="popSize">1.0</parameter>
        </populationModel>
    </init>

    <init id="RandomTree.t:NuclearTree" spec="beast.evolution.tree.RandomTree" estimate="false" initial="@Tree.t:NuclearTree" taxa="@Subset2">
        <populationModel id="ConstantPopulation0.t:NuclearTree" spec="ConstantPopulation">
            <parameter id="randomPopSize.t:NuclearTree" spec="parameter.RealParameter" name="popSize">1.0</parameter>
        </populationModel>
    </init>




--
You received this message because you are subscribed to the Google Groups "beast-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to beast-users...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/beast-users/cd14e744-78b8-4c96-8932-250564f9026do%40googlegroups.com.
<StarBeast_Phyllo_novo3-limpo.xml>

Leonardo Matheus Servino

unread,
Jun 17, 2020, 3:29:31 PM6/17/20
to beast...@googlegroups.com
Thank you!



--
Leonardo Matheus Servino
Pós-Graduação em Evolução e Diversidade
Universidade Federal do ABC - UFABC - Centro de Ciências Naturais e Humanas

LED I - Laboratório de Evolução e Diversidade I - Bloco Delta, sala 101

Rua Arcturus, 3. Jardim Antares
09606-070 São Bernardo do Campo - SP
Reply all
Reply to author
Forward
0 new messages