Have you tried to speed up the boot time of the Beaglebone?When we do not have our Beaglebone connected to the network, it takes about a minute longer to boot up.
I found where someone recommended editing the network interface file (/etc/network/interfaces).The change they recommended was changing auto to allow-hotplug for all of the interfaces.Since we are running a web server on the beagle bone could this cause problems?