I communicated with Jalesh through LinkedIn and he confirmed that the following fix worked. I just wanted to share this message with the rest of the group in case someone else needs help with updating State initial conditions with the MATLAB interface.
Set the states to the SV type. Set FSTATUS=1 for the state variables you want to update and then update the measured values for those states with MEAS = 3.2.
Another way to do this is to manipulate the files in the run directory to update the states directly, but this is more difficult. This is a better way if you have a large-dimensional state vector.
Best regards,
John Hedengren
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