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Welid,
You may want to start with Python or MATLAB tutorials: https://apmonitor.com/che263
In particular, there are some tutorials on solving simple systems with ODEINT in Python:
https://apmonitor.com/pdc/index.php/Main/SolveDifferentialEquations
and also those same simple systems with Gekko:
https://apmonitor.com/pdc/index.php/Main/PythonDifferentialEquations
Simulink and MATLAB are also capable tools. If you need to do simulation only then a tool like ODEINT (or MATLAB ode23) may be sufficient for you. Gekko is a good tool if you need to use differential equations for control or optimization.
Best regards,
John Hedengren